RchiOBHm_Chr5g0081081

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
87082218 .. 87085346
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35535

Sequence Viewer

Length: 243 bp
ATGCCTATGAGATTTTGCAGGTCCACCAGTCAGTTCAGGAGACTAACACAGATGATGGGATGGTTTGCAAATCCCCAATCTGAGCACGACTCTTATCATTTCATTTTTGGCACTATGGTATGTCTCCTCTTGGAAAGCAAATGCAAGGGTTTGGCCGTTGTTATTACTGATTGGAACACTAGGCGATCCAAGGGTTATGGTTTTGTTGCCGGATTTTGTGCTGGGACTTGGGTTCAACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.22

Weight (kDa)

9.43

Isoelectric Point (pI)

50.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019913)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 180
AcoI YGGCCR 1 cut(s) 153
AgsI TTSAA 1 cut(s) 236
Alw21I GWGCWC 1 cut(s) 87
Alw26I GTCTC 2 cut(s) 34, 128
AlwI GGATC 1 cut(s) 180
AoxI GGCC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 21
AvaII GGWCC 1 cut(s) 21
Bbv12I GWGCWC 1 cut(s) 87
BccI CCATC 2 cut(s) 49, 54
BceAI ACGGC 1 cut(s) 140
BcoDI GTCTC 2 cut(s) 34, 128
BfaI CTAG 1 cut(s) 180
BfuAI ACCTGC 1 cut(s) 9
Bme18I GGWCC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 21
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BsaJI CCNNGG 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 27
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 65
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 116
BseYI CCCAGC 1 cut(s) 221
BshFI GGCC 1 cut(s) 155
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 210
BslFI GGGAC 1 cut(s) 238
BsmAI GTCTC 2 cut(s) 34, 128
BsmFI GGGAC 1 cut(s) 238
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 185
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 1 cut(s) 73
BspMI ACCTGC 1 cut(s) 9
BspPI GGATC 1 cut(s) 180
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 185
BssT1I CCWWGG 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 81
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 1 cut(s) 188
BstMAI GTCTC 2 cut(s) 34, 128
BstMBI GATC 1 cut(s) 185
BsuRI GGCC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 65
BveI ACCTGC 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 21
CviJI RGCY 1 cut(s) 155
CviKI_1 RGCY 1 cut(s) 155
DdeI CTNAG 1 cut(s) 81
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 21
EcoT14I CCWWGG 1 cut(s) 189
ErhI CCWWGG 1 cut(s) 189
FaiI YATR 4 cut(s) 8, 116, 121, 198
FaqI GGGAC 1 cut(s) 238
FokI GGATG 1 cut(s) 72
FspBI CTAG 1 cut(s) 180
GsaI CCCAGC 1 cut(s) 225
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 210
HinfI GANTC 1 cut(s) 89
HpaII CCGG 1 cut(s) 210
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 24
HpyCH4V TGCA 3 cut(s) 18, 68, 144
HpyF3I CTNAG 1 cut(s) 81
Kzo9I GATC 1 cut(s) 185
LpnPI CCDG 5 cut(s) 4, 22, 40, 207, 223
MaeI CTAG 1 cut(s) 180
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 87
MlyI GAGTC 1 cut(s) 83
MnlI CCTC 1 cut(s) 137
MseI TTAA 1 cut(s) 241
MspI CCGG 1 cut(s) 210
NdeII GATC 1 cut(s) 185
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PspFI CCCAGC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 21
SaqAI TTAA 1 cut(s) 241
Sau3AI GATC 1 cut(s) 185
Sau96I GGNCC 1 cut(s) 21
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 1 cut(s) 87
SetI ASST 2 cut(s) 23, 241
SinI GGWCC 1 cut(s) 21
SspMI CTAG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 189
Tru1I TTAA 1 cut(s) 241
Tru9I TTAA 1 cut(s) 241
TspDTI ATGAA 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 21
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.