RchiOBHm_Chr4g0420151

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0022719
Physical Location & Seq
Forward (+)
45812159 .. 45813011
853 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38992

Sequence Viewer

Length: 561 bp
ATGCTTCTCTTCTCTCCTTTCCCCCAACAAAGGTACTCTCCCTCTACACACAATTTCTGCACATCCAAGAACATATCAAAACTCCAAGATACAAAAACAGAACGTTATAGAAAAACACTGCGAGCTTGGCAAAACCCAGGTAAAAAAGAACGTTGGAGAAGCCTTCGTGCTCGCCCTCCCCTGGCTCGAGCCCTGTGGCCAGCGATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAAATCCCCAAATTTGAAAAACTCAAAACCTCCTCTCCCTGCTTATGCAAAATCAAGCTCACCAACTCGATCCCCCCACCAGTTCTCCGCTGTCCCTCTCATCATCGACCACGACACCACCAGCTCCCACTCCCACTCCCTCAACGCCTGCTTCAACCTCACCAAACCCCAAATCGAAACCCAGCCTCCAAGCGCCCTAGCCTCTCCATCTCGATCTACACCGCTAGCTGCGGCCTCAACTCCGCCAAGCTCCTGGGCCGGGTCACCTGCGCCCCGTGGTGTACCAGCTGTTCATGGCCGCCAAAACCATCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

186

Amino Acids

20.45

Weight (kDa)

11.36

Isoelectric Point (pI)

75.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022719)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0420151
rosa_multiflora Rmu_sc0002516.1_g000010 Rmu_sc0031229.1_g000001
rosa_roxburghii Rroxscaffold_7G00159690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 520
Acc36I ACCTGC 1 cut(s) 520
AciI CCGC 5 cut(s) 333, 467, 476, 488, 544
AclI AACGTT 2 cut(s) 103, 151
AclWI GGATC 1 cut(s) 309
AcoI YGGCCR 2 cut(s) 197, 541
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 2 cut(s) 35, 528
AfiI CCNNNNNNNGG 3 cut(s) 30, 181, 504
AgsI TTSAA 2 cut(s) 262, 400
AjnI CCWGG 3 cut(s) 136, 180, 497
AluBI AGCT 6 cut(s) 125, 303, 369, 473, 495, 533
AluI AGCT 6 cut(s) 125, 303, 369, 473, 495, 533
Alw21I GWGCWC 1 cut(s) 172
AlwI GGATC 1 cut(s) 309
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 4 cut(s) 197, 477, 501, 541
ApeKI GCWGC 1 cut(s) 473
ApoI RAATTY 1 cut(s) 256
AspLEI GCGC 2 cut(s) 440, 517
AspS9I GGNCC 1 cut(s) 501
AsuC2I CCSGG 1 cut(s) 505
AsuHPI GGTGA 3 cut(s) 297, 397, 501
AsuNHI GCTAGC 1 cut(s) 469
AvaI CYCGRG 1 cut(s) 186
BalI TGGCCA 1 cut(s) 199
BanII GRGCYC 1 cut(s) 193
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 460
BccI CCATC 1 cut(s) 460
BciT130I CCWGG 3 cut(s) 138, 182, 499
BcnI CCSGG 1 cut(s) 505
BfaI CTAG 2 cut(s) 443, 470
BfoI RGCGCY 1 cut(s) 441
BfuAI ACCTGC 1 cut(s) 520
BisI GCNGC 3 cut(s) 474, 477, 544
BlsI GCNGC 3 cut(s) 475, 478, 545
Bme1390I CCNGG 4 cut(s) 138, 182, 499, 505
BmeT110I CYCGRG 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 501
BmrFI CCNGG 4 cut(s) 138, 182, 499, 505
BmtI GCTAGC 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 505
BsaJI CCNNGG 4 cut(s) 136, 180, 498, 520
BsaXI ACNNNNNCTCC 8 cut(s) 264, 294, 314, 344, 365, 395, 415, 445
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 181, 504
Bse1I ACTGG 1 cut(s) 325
BseBI CCWGG 3 cut(s) 138, 182, 499
BseDI CCNNGG 4 cut(s) 136, 180, 498, 520
BseGI GGATG 1 cut(s) 62
BseLI CCNNNNNNNGG 3 cut(s) 30, 181, 504
BseNI ACTGG 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 460
BseYI CCCAGC 1 cut(s) 426
BsgI GTGCAG 1 cut(s) 43
BshFI GGCC 4 cut(s) 199, 479, 503, 543
BsiHKAI GWGCWC 1 cut(s) 172
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 504
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 3 cut(s) 30, 181, 504
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 4 cut(s) 199, 479, 503, 543
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 2 cut(s) 172, 193
Bsp143I GATC 3 cut(s) 204, 314, 458
BspACI CCGC 5 cut(s) 333, 467, 476, 488, 544
BspANI GGCC 4 cut(s) 199, 479, 503, 543
BspMI ACCTGC 1 cut(s) 520
BspOI GCTAGC 1 cut(s) 473
BspPI GGATC 1 cut(s) 309
BsrI ACTGG 1 cut(s) 325
BssECI CCNNGG 4 cut(s) 136, 180, 498, 520
BssMI GATC 3 cut(s) 204, 314, 458
Bst2UI CCWGG 3 cut(s) 138, 182, 499
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 5 cut(s) 123, 172, 201, 394, 471
BstDSI CCRYGG 1 cut(s) 520
BstEII GGTNACC 1 cut(s) 507
BstF5I GGATG 1 cut(s) 62
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 2 cut(s) 440, 517
BstKTI GATC 3 cut(s) 207, 317, 461
BstMBI GATC 3 cut(s) 204, 314, 458
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 3 cut(s) 138, 182, 499
BstPI GGTNACC 1 cut(s) 507
BstSCI CCNGG 4 cut(s) 136, 180, 497, 503
BstV1I GCAGC 1 cut(s) 460
BstXI CCANNNNNNTGG 1 cut(s) 498
BsuRI GGCC 4 cut(s) 199, 479, 503, 543
BtgI CCRYGG 1 cut(s) 520
BtgZI GCGATG 1 cut(s) 539
BtsCI GGATG 1 cut(s) 62
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 116
BveI ACCTGC 1 cut(s) 520
Cac8I GCNNGC 5 cut(s) 123, 172, 201, 394, 471
CfoI GCGC 2 cut(s) 440, 517
Cfr13I GGNCC 1 cut(s) 501
Csp6I GTAC 2 cut(s) 34, 527
CviAII CATG 1 cut(s) 539
CviQI GTAC 2 cut(s) 34, 527
DpnI GATC 3 cut(s) 206, 316, 460
DpnII GATC 3 cut(s) 204, 314, 458
EaeI YGGCCR 2 cut(s) 197, 541
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
EciI GGCGGA 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 193
Eco88I CYCGRG 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 507
EcoO65I GGTNACC 1 cut(s) 507
EcoRII CCWGG 3 cut(s) 136, 180, 497
EcoT38I GRGCYC 1 cut(s) 193
FaeI CATG 1 cut(s) 542
FaiI YATR 4 cut(s) 74, 108, 291, 540
FaqI GGGAC 1 cut(s) 323
FatI CATG 1 cut(s) 538
Fnu4HI GCNGC 3 cut(s) 474, 477, 544
FokI GGATG 1 cut(s) 49
FriOI GRGCYC 1 cut(s) 193
Fsp4HI GCNGC 3 cut(s) 474, 477, 544
FspBI CTAG 2 cut(s) 443, 470
GlaI GCGC 2 cut(s) 439, 516
GluI GCNGC 3 cut(s) 474, 477, 544
GsaI CCCAGC 1 cut(s) 430
HaeII RGCGCY 1 cut(s) 441
HaeIII GGCC 4 cut(s) 199, 479, 503, 543
HapII CCGG 1 cut(s) 504
HhaI GCGC 2 cut(s) 440, 517
Hin1II CATG 1 cut(s) 542
Hin6I GCGC 2 cut(s) 438, 515
HinP1I GCGC 2 cut(s) 438, 515
HpaII CCGG 1 cut(s) 504
HphI GGTGA 3 cut(s) 297, 397, 501
Hpy166II GTNNAC 1 cut(s) 527
Hpy188III TCNNGA 1 cut(s) 456
Hpy8I GTNNAC 1 cut(s) 527
HpyAV CCTTC 1 cut(s) 173
HpyCH4IV ACGT 2 cut(s) 103, 151
HpyCH4V TGCA 2 cut(s) 60, 293
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpySE526I ACGT 2 cut(s) 103, 151
Hsp92II CATG 1 cut(s) 542
HspAI GCGC 2 cut(s) 438, 515
Kzo9I GATC 3 cut(s) 204, 314, 458
LmnI GCTCC 2 cut(s) 374, 500
Lsp1109I GCAGC 1 cut(s) 460
MaeI CTAG 2 cut(s) 443, 470
MaeII ACGT 2 cut(s) 103, 151
MaeIII GTNAC 1 cut(s) 507
MalI GATC 3 cut(s) 206, 316, 460
MboI GATC 3 cut(s) 204, 314, 458
MhlI GDGCHC 2 cut(s) 172, 193
MlsI TGGCCA 1 cut(s) 199
MluCI AATT 2 cut(s) 52, 256
MluNI TGGCCA 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 134
Mox20I TGGCCA 1 cut(s) 199
MscI TGGCCA 1 cut(s) 199
Msp20I TGGCCA 1 cut(s) 199
MspA1I CMGCKG 2 cut(s) 335, 533
MspI CCGG 1 cut(s) 504
MspR9I CCNGG 4 cut(s) 138, 182, 499, 505
MvaI CCWGG 3 cut(s) 138, 182, 499
MwoI GCNNNNNNNGC 1 cut(s) 127
NciI CCSGG 1 cut(s) 505
NdeII GATC 3 cut(s) 204, 314, 458
NheI GCTAGC 1 cut(s) 469
NlaIII CATG 1 cut(s) 542
NmuCI GTSAC 1 cut(s) 507
PaeR7I CTCGAG 1 cut(s) 186
PaqCI CACCTGC 1 cut(s) 520
PkrI GCNGC 3 cut(s) 475, 478, 545
Psp1406I AACGTT 2 cut(s) 103, 151
Psp6I CCWGG 3 cut(s) 136, 180, 497
PspEI GGTNACC 1 cut(s) 507
PspFI CCCAGC 1 cut(s) 426
PspGI CCWGG 3 cut(s) 136, 180, 497
PspPI GGNCC 1 cut(s) 501
PspXI VCTCGAGB 1 cut(s) 186
PsrI GAACNNNNNNTAC 2 cut(s) 519, 551
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 2 cut(s) 35, 528
RsaNI GTAC 2 cut(s) 34, 527
SatI GCNGC 3 cut(s) 474, 477, 544
Sau3AI GATC 3 cut(s) 204, 314, 458
Sau96I GGNCC 1 cut(s) 501
ScrFI CCNGG 4 cut(s) 138, 182, 499, 505
SduI GDGCHC 2 cut(s) 172, 193
Sfr274I CTCGAG 1 cut(s) 186
SlaI CTCGAG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 2 cut(s) 52, 256
SsiI CCGC 5 cut(s) 333, 467, 476, 488, 544
SspMI CTAG 2 cut(s) 443, 470
StyD4I CCNGG 4 cut(s) 136, 180, 497, 503
TaiI ACGT 2 cut(s) 106, 154
TaqI TCGA 5 cut(s) 187, 313, 351, 420, 457
TasI AATT 2 cut(s) 52, 256
TauI GCSGC 2 cut(s) 479, 546
TscAI CASTG 1 cut(s) 123
TseFI GTSAC 1 cut(s) 507
TseI GCWGC 1 cut(s) 473
Tsp45I GTSAC 1 cut(s) 507
TspDTI ATGAA 1 cut(s) 527
TspRI CASTG 1 cut(s) 123
XapI RAATTY 1 cut(s) 256
XhoI CTCGAG 1 cut(s) 186
XspI CTAG 2 cut(s) 443, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.