Rmu_sc0031229.1_g000001

Protein of unknown function (DUF1005)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031229.1
OG0022719
Physical Location & Seq
Forward (+)
1 .. 1034
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031229.1_g000001.1.cds

Sequence Viewer

Length: 602 bp
gaaaatttctctctcttcttcccgatcttcaccaagggcctctctttctctcttctctctctctctctcacactgttctctacaaccaaaattcccaagttgggttcctcttctgcggcgccatcaccgttgctcaaccctcggcggtgctcgccctcccctggctagagcctcatggccagcgatttctctcgctatctctcccccccccccccccccccaaactcaaaacctcctctccctgcttctgcaaaatcaagctcaccaacttcccccaccagttctccgtcatccctctcatcatcgaccacgatgttgccgctgccgccgtcgctcagaccactacaacccacgacgccgcccactcccactccctcaacgcctgcttcaacctcaccaaaccccaaatcagaaaccctagcctctccatctcaatctacaaatcaaagcagctgacgtcaccgtgggaattggaggggcatctaagaagaagttgtcgtcggaactgcgcgaatcgatgggatctgcgaaggggttgggttgtgatgggtgcaccagtgggtgagtcgggtcgggttggtttggtggctctgggtctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1005

Protein Analysis

199

Amino Acids

21.8

Weight (kDa)

9.65

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022719)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0420151
rosa_multiflora Rmu_sc0002516.1_g000010 Rmu_sc0031229.1_g000001
rosa_roxburghii Rroxscaffold_7G00159690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 460
AccB1I GGYRCC 1 cut(s) 118
AccII CGCG 1 cut(s) 511
AciI CCGC 5 cut(s) 116, 145, 320, 326, 359
AclWI GGATC 1 cut(s) 530
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 2 cut(s) 4, 90
AcyI GRCGYC 3 cut(s) 119, 356, 457
AfiI CCNNNNNNNGG 2 cut(s) 101, 161
AgsI TTSAA 1 cut(s) 390
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 2 cut(s) 261, 453
AluI AGCT 2 cut(s) 261, 453
Alw21I GWGCWC 2 cut(s) 152, 555
Alw44I GTGCAC 1 cut(s) 551
AlwI GGATC 1 cut(s) 530
AoxI GGCC 2 cut(s) 37, 177
ApaLI GTGCAC 1 cut(s) 551
ApeKI GCWGC 2 cut(s) 322, 450
ApoI RAATTY 2 cut(s) 4, 90
AspLEI GCGC 2 cut(s) 121, 511
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 6 cut(s) 22, 117, 255, 387, 452, 574
BaeGI GKGCMC 1 cut(s) 555
BalI TGGCCA 1 cut(s) 179
BanI GGYRCC 1 cut(s) 118
Bbv12I GWGCWC 2 cut(s) 152, 555
BbvI GCAGC 2 cut(s) 309, 462
BccI CCATC 4 cut(s) 130, 436, 512, 540
BceAI ACGGC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 162
BfaI CTAG 2 cut(s) 166, 419
BfmI CTRYAG 1 cut(s) 598
BfoI RGCGCY 1 cut(s) 122
BisI GCNGC 6 cut(s) 117, 320, 323, 326, 359, 451
BlsI GCNGC 6 cut(s) 118, 321, 324, 327, 360, 452
Bme1390I CCNGG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 2 cut(s) 106, 120
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 489
Bsa29I ATCGAT 1 cut(s) 516
BsaHI GRCGYC 3 cut(s) 119, 356, 457
BsaJI CCNNGG 4 cut(s) 33, 140, 160, 463
BsaXI ACNNNNNCTCC 6 cut(s) 222, 252, 268, 298, 355, 385
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 161
Bse1I ACTGG 2 cut(s) 279, 556
BseBI CCWGG 1 cut(s) 162
BseCI ATCGAT 1 cut(s) 516
BseDI CCNNGG 4 cut(s) 33, 140, 160, 463
BseGI GGATG 1 cut(s) 290
BseLI CCNNNNNNNGG 2 cut(s) 101, 161
BseMII CTCAG 1 cut(s) 349
BseNI ACTGG 2 cut(s) 279, 556
BseRI GAGGAG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 2 cut(s) 309, 462
Bsh1236I CGCG 1 cut(s) 511
BshFI GGCC 2 cut(s) 39, 179
BshNI GGYRCC 1 cut(s) 118
BshVI ATCGAT 1 cut(s) 516
BsiHKAI GWGCWC 2 cut(s) 152, 555
BslI CCNNNNNNNGG 2 cut(s) 101, 161
BsnI GGCC 2 cut(s) 39, 179
Bsp1286I GDGCHC 2 cut(s) 152, 555
Bsp143I GATC 2 cut(s) 24, 522
BspACI CCGC 5 cut(s) 116, 145, 320, 326, 359
BspANI GGCC 2 cut(s) 39, 179
BspCNI CTCAG 1 cut(s) 348
BspDI ATCGAT 1 cut(s) 516
BspFNI CGCG 1 cut(s) 511
BspLI GGNNCC 2 cut(s) 106, 120
BspPI GGATC 1 cut(s) 530
BspT107I GGYRCC 1 cut(s) 118
BsrI ACTGG 2 cut(s) 279, 556
BssECI CCNNGG 4 cut(s) 33, 140, 160, 463
BssMI GATC 2 cut(s) 24, 522
BssNI GRCGYC 3 cut(s) 119, 356, 457
BssT1I CCWWGG 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 75, 129, 464
Bst6I CTCTTC 3 cut(s) 20, 57, 115
BstACI GRCGYC 3 cut(s) 119, 356, 457
BstC8I GCNNGC 3 cut(s) 152, 181, 384
BstDEI CTNAG 2 cut(s) 335, 484
BstDSI CCRYGG 1 cut(s) 463
BstF5I GGATG 1 cut(s) 290
BstFNI CGCG 1 cut(s) 511
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 2 cut(s) 121, 511
BstKTI GATC 2 cut(s) 27, 525
BstMBI GATC 2 cut(s) 24, 522
BstMWI GCNNNNNNNGC 3 cut(s) 151, 325, 331
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 598
BstSLI GKGCMC 1 cut(s) 555
BstUI CGCG 1 cut(s) 511
BstV1I GCAGC 2 cut(s) 309, 462
BstX2I RGATCY 1 cut(s) 522
BstYI RGATCY 1 cut(s) 522
Bsu15I ATCGAT 1 cut(s) 516
BsuRI GGCC 2 cut(s) 39, 179
BsuTUI ATCGAT 1 cut(s) 516
BtgI CCRYGG 1 cut(s) 463
BtsCI GGATG 1 cut(s) 290
BtsIMutI CAGTG 2 cut(s) 71, 563
Cac8I GCNNGC 3 cut(s) 152, 181, 384
CfoI GCGC 2 cut(s) 121, 511
Cfr13I GGNCC 1 cut(s) 37
ClaI ATCGAT 1 cut(s) 516
CseI GACGC 1 cut(s) 364
CviAII CATG 1 cut(s) 175
CviJI RGCY 8 cut(s) 39, 165, 171, 179, 261, 422, 453, 589
CviKI_1 RGCY 8 cut(s) 39, 165, 171, 179, 261, 422, 453, 589
DdeI CTNAG 2 cut(s) 335, 484
DinI GGCGCC 1 cut(s) 120
DpnI GATC 2 cut(s) 26, 524
DpnII GATC 2 cut(s) 24, 522
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 3 cut(s) 20, 57, 115
EarI CTCTTC 3 cut(s) 20, 57, 115
Eco130I CCWWGG 1 cut(s) 33
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 33
EgeI GGCGCC 1 cut(s) 120
EheI GGCGCC 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 1 cut(s) 178
FaiI YATR 1 cut(s) 176
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 6 cut(s) 117, 320, 323, 326, 359, 451
FokI GGATG 1 cut(s) 277
Fsp4HI GCNGC 6 cut(s) 117, 320, 323, 326, 359, 451
FspBI CTAG 2 cut(s) 166, 419
GlaI GCGC 2 cut(s) 120, 510
GluI GCNGC 6 cut(s) 117, 320, 323, 326, 359, 451
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 2 cut(s) 39, 179
HgaI GACGC 1 cut(s) 364
HhaI GCGC 2 cut(s) 121, 511
Hin1I GRCGYC 3 cut(s) 119, 356, 457
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 2 cut(s) 119, 509
HinP1I GCGC 2 cut(s) 119, 509
HinfI GANTC 2 cut(s) 513, 565
HphI GGTGA 6 cut(s) 22, 117, 255, 387, 452, 574
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 3 cut(s) 338, 412, 503
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 553
Hpy99I CGWCG 3 cut(s) 334, 358, 503
HpyAV CCTTC 1 cut(s) 524
HpyCH4III ACNGT 3 cut(s) 75, 129, 464
HpyCH4IV ACGT 1 cut(s) 457
HpyCH4V TGCA 2 cut(s) 251, 553
HpyF10VI GCNNNNNNNGC 3 cut(s) 151, 325, 331
HpyF3I CTNAG 2 cut(s) 335, 484
HpySE526I ACGT 1 cut(s) 457
Hsp92I GRCGYC 3 cut(s) 119, 356, 457
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 2 cut(s) 119, 509
KasI GGCGCC 1 cut(s) 118
Kzo9I GATC 2 cut(s) 24, 522
LpnPI CCDG 8 cut(s) 147, 174, 193, 255, 292, 396, 569, 577
Lsp1109I GCAGC 2 cut(s) 309, 462
LweI GCATC 1 cut(s) 489
MaeI CTAG 2 cut(s) 166, 419
MaeII ACGT 1 cut(s) 457
MaeIII GTNAC 1 cut(s) 458
MalI GATC 2 cut(s) 26, 524
MboI GATC 2 cut(s) 24, 522
MboII GAAGA 6 cut(s) 7, 10, 19, 44, 102, 500
MflI RGATCY 1 cut(s) 522
MhlI GDGCHC 2 cut(s) 152, 555
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 3 cut(s) 4, 90, 469
MluNI TGGCCA 1 cut(s) 179
Mly113I GGCGCC 1 cut(s) 119
MlyI GAGTC 1 cut(s) 574
MmeI TCCRAC 1 cut(s) 481
Mox20I TGGCCA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 179
Msp20I TGGCCA 1 cut(s) 179
MspA1I CMGCKG 2 cut(s) 322, 453
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MvnI CGCG 1 cut(s) 511
MwoI GCNNNNNNNGC 3 cut(s) 151, 325, 331
NarI GGCGCC 1 cut(s) 119
NdeII GATC 2 cut(s) 24, 522
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 2 cut(s) 106, 120
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 1 cut(s) 458
PfeI GAWTC 1 cut(s) 513
PkrI GCNGC 6 cut(s) 118, 321, 324, 327, 360, 452
PleI GAGTC 1 cut(s) 573
PluTI GGCGCC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 106, 120
PspPI GGNCC 1 cut(s) 37
PsuI RGATCY 1 cut(s) 522
PvuII CAGCTG 1 cut(s) 453
SatI GCNGC 6 cut(s) 117, 320, 323, 326, 359, 451
Sau3AI GATC 2 cut(s) 24, 522
Sau96I GGNCC 1 cut(s) 37
SchI GAGTC 1 cut(s) 574
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 2 cut(s) 152, 555
SetI ASST 5 cut(s) 235, 263, 395, 455, 460
SfaNI GCATC 1 cut(s) 489
SfcI CTRYAG 1 cut(s) 598
SfoI GGCGCC 1 cut(s) 120
Sse9I AATT 3 cut(s) 4, 90, 469
SsiI CCGC 5 cut(s) 116, 145, 320, 326, 359
SspDI GGCGCC 1 cut(s) 118
SspMI CTAG 2 cut(s) 166, 419
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 3 cut(s) 75, 129, 464
TaiI ACGT 1 cut(s) 460
TaqI TCGA 2 cut(s) 305, 516
TasI AATT 3 cut(s) 4, 90, 469
TauI GCSGC 4 cut(s) 119, 322, 328, 361
TfiI GAWTC 1 cut(s) 513
TscAI CASTG 2 cut(s) 78, 563
TseFI GTSAC 1 cut(s) 458
TseI GCWGC 2 cut(s) 322, 450
Tsp45I GTSAC 1 cut(s) 458
TspGWI ACGGA 1 cut(s) 276
TspRI CASTG 2 cut(s) 78, 563
VneI GTGCAC 1 cut(s) 551
XapI RAATTY 2 cut(s) 4, 90
XspI CTAG 2 cut(s) 166, 419
ZraI GACGTC 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.