Rroxscaffold_7G00159690

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0022719
Physical Location & Seq
Forward (+)
2794190 .. 2797286
3097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00159690.1

Sequence Viewer

Length: 771 bp
ATGCCCTGGTCCATCTCTACCCTTTGTAGGCCATCTCTACCTCTTCCAAAAACCCTACATAAAACACTTGCAAAACTCTCTGATAAATATGGTCCATTTGTATACATCAAATTTGGCTCCCGCCCTGTCATTCTTGTATCGTCCCCATCTGCAGTCGAGGAATGCTTCACAAAGCCTGACGTTGCCTTTGCAAACCGTCCAAAGCTGCTTGCTGGAAAATACCTTGCGCTAGCGATGGCTGATCCCACATTATCTCCCTCACCTCCTCCACCTACGGGCCTCCTCACCATTGACTCGCCACGCCCGCCCATCTCGATCAAAGAAACAAACTTTTCACGAATCCATATAAATTCACACATCCAAGAACACATCAAAACTCCAAGATACAAAACAAAACGTTATAGAAAAAACTGCGAGCTTGGCAAAACCCATATCAAAAAGAACGTCGGAGAAGCCTTCGTGCTCGCCCTCCCTAGCTCTAGCCCCGTGGCCGCGATCTCTCTCTCTCTGTCTCTCTCTCTCTCTCCCCAAATCCCCAAATTTGAAAAAACTCAAAACCTCCTCTCCTGCTTCTCCAAATCCCCAAATTTGAAAAACTCAAAACCTCCTTTCCCCGCTTCGCAAAATCAAGCTCACCAACTCCCCCACCAGTTCTCCGCCGTCCCTCTCATTGTCCACCACGACGCCGCCCGCTCCCACTCCCACTCCCTCGACGCACCGCTTCAACCTCACCAAACCCCAAATCGAAACCCCGGCCTCCAAGCGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00140 ko00905 ko00943 ko01100 ko01110 ko04913 ko04917 ko04927 ko04934 map00140 map00905 map00943 map01100 map01110 map04913 map04917 map04927 map04934
Pfam Domains
Protein Families
p450

Protein Analysis

256

Amino Acids

28.12

Weight (kDa)

10.02

Isoelectric Point (pI)

59.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 17 - 69 1.4e-06 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022719)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0420151
rosa_multiflora Rmu_sc0002516.1_g000010 Rmu_sc0031229.1_g000001
rosa_roxburghii Rroxscaffold_7G00159690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 693
AccI GTMKAC 1 cut(s) 102
AccII CGCG 1 cut(s) 494
AciI CCGC 8 cut(s) 121, 305, 492, 615, 657, 687, 691, 719
AclI AACGTT 1 cut(s) 397
AclWI GGATC 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 4 cut(s) 110, 349, 539, 586
AcyI GRCGYC 1 cut(s) 684
AfiI CCNNNNNNNGG 2 cut(s) 27, 275
AgsI TTSAA 3 cut(s) 545, 592, 725
AjnI CCWGG 1 cut(s) 5
AluBI AGCT 4 cut(s) 205, 418, 477, 632
AluI AGCT 4 cut(s) 205, 418, 477, 632
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 516
AlwI GGATC 1 cut(s) 236
AoxI GGCC 4 cut(s) 29, 277, 489, 754
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 4 cut(s) 110, 349, 539, 586
ArsI GACNNNNNNTTYG 4 cut(s) 170, 202, 429, 461
AspLEI GCGC 2 cut(s) 229, 766
AspS9I GGNCC 3 cut(s) 9, 92, 277
AsuC2I CCSGG 1 cut(s) 753
AsuHPI GGTGA 4 cut(s) 252, 277, 626, 722
AsuNHI GCTAGC 1 cut(s) 229
AvaII GGWCC 2 cut(s) 9, 92
Bbv12I GWGCWC 1 cut(s) 465
BbvI GCAGC 1 cut(s) 192
BccI CCATC 5 cut(s) 20, 40, 154, 229, 317
BceAI ACGGC 1 cut(s) 644
BciT130I CCWGG 1 cut(s) 7
BcnI CCSGG 1 cut(s) 753
BcoDI GTCTC 1 cut(s) 516
BfaI CTAG 4 cut(s) 230, 474, 480, 769
BfmI CTRYAG 1 cut(s) 150
BfoI RGCGCY 1 cut(s) 767
BisI GCNGC 3 cut(s) 206, 492, 687
BlsI GCNGC 3 cut(s) 207, 493, 688
Bme1390I CCNGG 2 cut(s) 7, 753
Bme18I GGWCC 2 cut(s) 9, 92
BmgT120I GGNCC 3 cut(s) 9, 92, 277
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 2 cut(s) 7, 753
BmtI GCTAGC 1 cut(s) 233
BpuMI CCSGG 1 cut(s) 753
BsaHI GRCGYC 1 cut(s) 684
BsaJI CCNNGG 3 cut(s) 5, 486, 751
BsaXI ACNNNNNCTCC 8 cut(s) 238, 268, 548, 578, 638, 668, 689, 719
Bsc4I CCNNNNNNNGG 2 cut(s) 27, 275
Bse1I ACTGG 1 cut(s) 649
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 3 cut(s) 5, 486, 751
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 2 cut(s) 27, 275
BseNI ACTGG 1 cut(s) 649
BseRI GAGGAG 3 cut(s) 255, 272, 551
BseXI GCAGC 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 494
BshFI GGCC 4 cut(s) 31, 279, 491, 756
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 1 cut(s) 753
BslFI GGGAC 2 cut(s) 127, 647
BslI CCNNNNNNNGG 2 cut(s) 27, 275
BsmAI GTCTC 1 cut(s) 516
BsmFI GGGAC 2 cut(s) 127, 647
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 4 cut(s) 31, 279, 491, 756
Bsp1286I GDGCHC 1 cut(s) 465
Bsp143I GATC 3 cut(s) 241, 315, 495
BspACI CCGC 8 cut(s) 121, 305, 492, 615, 657, 687, 691, 719
BspANI GGCC 4 cut(s) 31, 279, 491, 756
BspFNI CGCG 1 cut(s) 494
BspLI GGNNCC 1 cut(s) 118
BspMAI CTGCAG 1 cut(s) 154
BspOI GCTAGC 1 cut(s) 233
BspPI GGATC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 693
BsrI ACTGG 1 cut(s) 649
BssECI CCNNGG 3 cut(s) 5, 486, 751
BssMI GATC 3 cut(s) 241, 315, 495
BssNAI GTATAC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 684
Bst1107I GTATAC 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 7
Bst4CI ACNGT 1 cut(s) 197
Bst6I CTCTTC 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 684
BstC8I GCNNGC 6 cut(s) 210, 231, 305, 416, 465, 691
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 357
BstFNI CGCG 1 cut(s) 494
BstH2I RGCGCY 1 cut(s) 767
BstHHI GCGC 2 cut(s) 229, 766
BstKTI GATC 3 cut(s) 244, 318, 498
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 3 cut(s) 241, 315, 495
BstMWI GCNNNNNNNGC 2 cut(s) 304, 420
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 2 cut(s) 5, 751
BstSFI CTRYAG 1 cut(s) 150
BstUI CGCG 1 cut(s) 494
BstV1I GCAGC 1 cut(s) 192
BstZ17I GTATAC 1 cut(s) 103
BsuRI GGCC 4 cut(s) 31, 279, 491, 756
BtgI CCRYGG 1 cut(s) 486
BtgZI GCGATG 1 cut(s) 248
BtsCI GGATG 1 cut(s) 357
Cac8I GCNNGC 6 cut(s) 210, 231, 305, 416, 465, 691
CfoI GCGC 2 cut(s) 229, 766
Cfr13I GGNCC 3 cut(s) 9, 92, 277
CseI GACGC 2 cut(s) 692, 722
DpnI GATC 3 cut(s) 243, 317, 497
DpnII GATC 3 cut(s) 241, 315, 495
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
EciI GGCGGA 1 cut(s) 646
Eco47I GGWCC 2 cut(s) 9, 92
EcoRII CCWGG 1 cut(s) 5
FaiI YATR 7 cut(s) 60, 90, 103, 345, 347, 402, 432
FaqI GGGAC 2 cut(s) 127, 647
FauI CCCGC 4 cut(s) 128, 312, 622, 698
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 206, 492, 687
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 3 cut(s) 206, 492, 687
FspBI CTAG 4 cut(s) 230, 474, 480, 769
GlaI GCGC 2 cut(s) 228, 765
GluI GCNGC 3 cut(s) 206, 492, 687
HaeII RGCGCY 1 cut(s) 767
HaeIII GGCC 4 cut(s) 31, 279, 491, 756
HapII CCGG 1 cut(s) 753
HgaI GACGC 2 cut(s) 692, 722
HhaI GCGC 2 cut(s) 229, 766
Hin1I GRCGYC 1 cut(s) 684
Hin6I GCGC 2 cut(s) 227, 764
HinP1I GCGC 2 cut(s) 227, 764
HinfI GANTC 2 cut(s) 293, 339
HpaII CCGG 1 cut(s) 753
HphI GGTGA 4 cut(s) 252, 277, 626, 722
Hpy166II GTNNAC 2 cut(s) 103, 676
Hpy188I TCNGA 2 cut(s) 82, 449
Hpy188III TCNNGA 2 cut(s) 313, 336
Hpy8I GTNNAC 2 cut(s) 103, 676
Hpy99I CGWCG 3 cut(s) 449, 686, 716
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 3 cut(s) 180, 397, 444
HpyCH4V TGCA 3 cut(s) 71, 152, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 304, 420
HpySE526I ACGT 3 cut(s) 180, 397, 444
Hsp92I GRCGYC 1 cut(s) 684
HspAI GCGC 2 cut(s) 227, 764
Kzo9I GATC 3 cut(s) 241, 315, 495
LmnI GCTCC 2 cut(s) 122, 698
LpnPI CCDG 7 cut(s) 19, 138, 189, 198, 580, 662, 766
Lsp1109I GCAGC 1 cut(s) 192
MaeI CTAG 4 cut(s) 230, 474, 480, 769
MaeII ACGT 3 cut(s) 180, 397, 444
MalI GATC 3 cut(s) 243, 317, 497
MbiI CCGCTC 1 cut(s) 693
MboI GATC 3 cut(s) 241, 315, 495
MboII GAAGA 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 465
MluCI AATT 4 cut(s) 110, 349, 539, 586
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 1 cut(s) 427
MspI CCGG 1 cut(s) 753
MspR9I CCNGG 2 cut(s) 7, 753
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 1 cut(s) 7
MvnI CGCG 1 cut(s) 494
MwoI GCNNNNNNNGC 2 cut(s) 304, 420
NciI CCSGG 1 cut(s) 753
NdeII GATC 3 cut(s) 241, 315, 495
NheI GCTAGC 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 118
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 339
PkrI GCNGC 3 cut(s) 207, 493, 688
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
Psp1406I AACGTT 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 5
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 3 cut(s) 9, 92, 277
PstI CTGCAG 1 cut(s) 154
SatI GCNGC 3 cut(s) 206, 492, 687
Sau3AI GATC 3 cut(s) 241, 315, 495
Sau96I GGNCC 3 cut(s) 9, 92, 277
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 2 cut(s) 7, 753
SduI GDGCHC 1 cut(s) 465
SfcI CTRYAG 1 cut(s) 150
SinI GGWCC 2 cut(s) 9, 92
Sse9I AATT 4 cut(s) 110, 349, 539, 586
SsiI CCGC 8 cut(s) 121, 305, 492, 615, 657, 687, 691, 719
SspMI CTAG 4 cut(s) 230, 474, 480, 769
StyD4I CCNGG 2 cut(s) 5, 751
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 3 cut(s) 183, 400, 447
TaqI TCGA 4 cut(s) 156, 314, 711, 745
TasI AATT 4 cut(s) 110, 349, 539, 586
TauI GCSGC 2 cut(s) 494, 689
TfiI GAWTC 1 cut(s) 339
TseI GCWGC 1 cut(s) 205
VpaK11BI GGWCC 2 cut(s) 9, 92
XapI RAATTY 4 cut(s) 110, 349, 539, 586
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 4 cut(s) 230, 474, 480, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.