RchiOBHm_Chr4g0442341

Leucine rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0024954
Physical Location & Seq
Reverse (-)
63974152 .. 63974589
438 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41010

Sequence Viewer

Length: 339 bp
ATGTTGCTCCAGGTAACTTGCATCACCGTGGCCGTGACTGAGAAATGCGATTTTTATGGTTTTGGTGTGGCGGCCCTAGAAATAATCATGGGAAGACATCCTGGAGAACTGATTTTCTTGACTGCAACATCTTCCTTGATGTCGACAAAGTCACCCTTGGTTTTACAAATTATGCTGAAAGATGTGTTGGATCCACGGCTATCTCCTCCCAGCATTCAACCGGTAGCTTCTAGTGTGGTTATGCTAGCCACATTAGCCTTGACATGCCTACGCTCCAAACCAAACTGTAGGCCAACAATGGAACATTTGTCGAAGGAGCTTCTGAATCGTACACCTTGA

Protein Analysis

112

Amino Acids

12.21

Weight (kDa)

8.45

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024954)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0442341
rosa_roxburghii Rroxscaffold_5G00383200
rosa_rugosa Rorug04G0340500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 143
AciI CCGC 1 cut(s) 71
AclWI GGATC 2 cut(s) 185, 198
AcoI YGGCCR 1 cut(s) 30
AfaI GTAC 1 cut(s) 331
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 2 cut(s) 9, 100
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AluBI AGCT 2 cut(s) 227, 319
AluI AGCT 2 cut(s) 227, 319
AlwI GGATC 2 cut(s) 185, 198
AoxI GGCC 3 cut(s) 30, 72, 290
AsiGI ACCGGT 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 2 cut(s) 16, 144
AsuNHI GCTAGC 1 cut(s) 244
BamHI GGATCC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 100
BceAI ACGGC 2 cut(s) 17, 212
BciT130I CCWGG 2 cut(s) 11, 102
BfaI CTAG 3 cut(s) 77, 231, 245
BfmI CTRYAG 1 cut(s) 286
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 2 cut(s) 11, 102
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 2 cut(s) 11, 102
BmsI GCATC 1 cut(s) 30
BmtI GCTAGC 1 cut(s) 248
BpiI GAAGAC 1 cut(s) 100
BpmI CTGGAG 1 cut(s) 123
BsaJI CCNNGG 3 cut(s) 27, 156, 194
BsaWI WCCGGW 1 cut(s) 220
Bse118I RCCGGY 1 cut(s) 220
BseBI CCWGG 2 cut(s) 11, 102
BseDI CCNNGG 3 cut(s) 27, 156, 194
BseGI GGATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 195
BseYI CCCAGC 1 cut(s) 209
BshFI GGCC 3 cut(s) 32, 74, 292
BshTI ACCGGT 1 cut(s) 220
BsiSI CCGG 1 cut(s) 221
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 3 cut(s) 32, 74, 292
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 71
BspANI GGCC 3 cut(s) 32, 74, 292
BspCNI CTCAG 1 cut(s) 31
BspLI GGNNCC 1 cut(s) 192
BspOI GCTAGC 1 cut(s) 248
BspPI GGATC 2 cut(s) 185, 198
BsrFI RCCGGY 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 220
BssECI CCNNGG 3 cut(s) 27, 156, 194
BssMI GATC 1 cut(s) 190
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 11, 102
Bst4CI ACNGT 2 cut(s) 28, 287
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 39
BstDSI CCRYGG 2 cut(s) 27, 194
BstF5I GGATG 1 cut(s) 97
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 254
BstNI CCWGG 2 cut(s) 11, 102
BstNSI RCATGY 1 cut(s) 267
BstSCI CCNGG 2 cut(s) 9, 100
BstSFI CTRYAG 1 cut(s) 286
BstV2I GAAGAC 1 cut(s) 100
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 3 cut(s) 32, 74, 292
BtgI CCRYGG 2 cut(s) 27, 194
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 1 cut(s) 330
CspAI ACCGGT 1 cut(s) 220
CviAII CATG 2 cut(s) 88, 264
CviJI RGCY 8 cut(s) 32, 74, 199, 227, 248, 257, 292, 319
CviKI_1 RGCY 8 cut(s) 32, 74, 199, 227, 248, 257, 292, 319
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 156
EcoRII CCWGG 2 cut(s) 9, 100
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 2 cut(s) 91, 267
FaiI YATR 5 cut(s) 57, 89, 173, 242, 265
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FatI CATG 2 cut(s) 87, 263
FblI GTMKAC 1 cut(s) 143
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 3 cut(s) 77, 231, 245
GluI GCNGC 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 123
HaeIII GGCC 3 cut(s) 32, 74, 292
HapII CCGG 1 cut(s) 221
Hin1II CATG 2 cut(s) 91, 267
HincII GTYRAC 1 cut(s) 144
HindII GTYRAC 1 cut(s) 144
HinfI GANTC 1 cut(s) 325
HpaII CCGG 1 cut(s) 221
HphI GGTGA 2 cut(s) 16, 144
Hpy166II GTNNAC 2 cut(s) 144, 332
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 144, 332
HpyAV CCTTC 1 cut(s) 307
HpyCH4III ACNGT 2 cut(s) 28, 287
HpyCH4V TGCA 2 cut(s) 21, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 39
Hsp92II CATG 2 cut(s) 91, 267
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 3 cut(s) 12, 278, 316
LpnPI CCDG 5 cut(s) 23, 87, 114, 223, 234
LweI GCATC 1 cut(s) 30
MaeI CTAG 3 cut(s) 77, 231, 245
MaeIII GTNAC 3 cut(s) 13, 34, 150
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 2 cut(s) 105, 123
MflI RGATCY 1 cut(s) 190
MluCI AATT 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 26
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 11, 102
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 2 cut(s) 11, 102
MwoI GCNNNNNNNGC 1 cut(s) 254
NdeII GATC 1 cut(s) 190
NheI GCTAGC 1 cut(s) 244
NlaIII CATG 2 cut(s) 91, 267
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 2 cut(s) 34, 150
NspI RCATGY 1 cut(s) 267
PctI GAATGC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 325
PflFI GACNNNGTC 1 cut(s) 148
PfoI TCCNGGA 1 cut(s) 100
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 1 cut(s) 73
Psp6I CCWGG 2 cut(s) 9, 100
PspFI CCCAGC 1 cut(s) 209
PspGI CCWGG 2 cut(s) 9, 100
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 73
PsuI RGATCY 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 148
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
RseI CAYNNNNRTG 1 cut(s) 26
SalI GTCGAC 1 cut(s) 142
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 1 cut(s) 73
ScrFI CCNGG 2 cut(s) 11, 102
SetI ASST 4 cut(s) 15, 229, 321, 337
SfaNI GCATC 1 cut(s) 30
SfcI CTRYAG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 26
Sse9I AATT 1 cut(s) 168
SsiI CCGC 1 cut(s) 71
SspMI CTAG 3 cut(s) 77, 231, 245
StyD4I CCNGG 2 cut(s) 9, 100
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 28, 287
TaqI TCGA 2 cut(s) 143, 311
TasI AATT 1 cut(s) 168
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 325
TseFI GTSAC 2 cut(s) 34, 150
Tsp45I GTSAC 2 cut(s) 34, 150
Tth111I GACNNNGTC 1 cut(s) 148
XceI RCATGY 1 cut(s) 267
XmiI GTMKAC 1 cut(s) 143
XspI CTAG 3 cut(s) 77, 231, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.