RchiOBHm_Chr5g0003101
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0020549
Physical Location & Seq
Reverse (-)
1846489 .. 1847998
1510 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28443

Sequence Viewer

Length: 525 bp
ATGTCTTTGTGTTCGAATGAGCAGTCAATTGGAGTTGGGTGTATTAGTGGTCAGAAGGTTGCTGTGGATAGGGAGAACTTGAATGGGCATGATGAGAGTGTTTTGAGATGCGAGGAGGAAGAGGATGAGGATGAGGAGGAAGATGTGGATTTCAATCCTTTTCTTAAAGGAGCTGTTTCGCCGGAGGCTTCTTCGAGTCTGAGCTCCGAAGTGGAGGGTATAGATGGTGAAGTTGATGACGTCGGCAGAAACAATGGCGTTGACTCGTTGAATGTAGGTTGTGAGGGGGAGACGCGTGCTGCTGAAGATTCTGAGCATGGGGAGCAAGAAATGGTGATGCAAACTGCTGCTGCTTCTTCTGAAGATGTGTCGGAAAATGAATTAGGGAACTTTGATTCCGGAATTGAACATGTGGAAGAAAAGGATGATGGCTCAAGTTTGGGACCTGATGTTAATCATGTTACTGAAGGTCAGTTGAGTAGCAAACAAAGCAGACACCAGGACGTCCACAATAGATCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6

Protein Analysis

174

Amino Acids

18.71

Weight (kDa)

4.08

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020549)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0003041 RchiOBHm_Chr5g0003101 RchiOBHm_Chr5g0003151
rosa_multiflora Rmu_sc0000146.1_g000023
rosa_samantha Rh5AG025100 Rh5CG027900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 243, 507
AccII CGCG 1 cut(s) 295
AccIII TCCGGA 1 cut(s) 398
AcuI CTGAAG 3 cut(s) 324, 381, 486
AcyI GRCGYC 2 cut(s) 240, 504
AflIII ACRYGT 2 cut(s) 293, 409
AgsI TTSAA 4 cut(s) 82, 154, 271, 407
AjnI CCWGG 1 cut(s) 498
AloI GAACNNNNNNTCC 2 cut(s) 380, 412
AluBI AGCT 2 cut(s) 173, 204
AluI AGCT 2 cut(s) 173, 204
Alw21I GWGCWC 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 284
Aor13HI TCCGGA 1 cut(s) 398
ApeKI GCWGC 3 cut(s) 299, 347, 350
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 2 cut(s) 239, 346
AsuII TTCGAA 1 cut(s) 14
AvaII GGWCC 1 cut(s) 443
BanII GRGCYC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 3 cut(s) 286, 334, 337
BccI CCATC 2 cut(s) 218, 422
BciT130I CCWGG 1 cut(s) 500
BcoDI GTCTC 1 cut(s) 284
BfaI CTAG 1 cut(s) 519
BglII AGATCT 1 cut(s) 515
BisI GCNGC 3 cut(s) 300, 348, 351
BlsI GCNGC 3 cut(s) 301, 349, 352
Bme1390I CCNGG 1 cut(s) 500
Bme18I GGWCC 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 1 cut(s) 500
BmsI GCATC 2 cut(s) 98, 327
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 418
BsaBI GATNNNNATC 2 cut(s) 153, 453
BsaHI GRCGYC 2 cut(s) 240, 504
BsaWI WCCGGW 1 cut(s) 398
Bse8I GATNNNNATC 2 cut(s) 153, 453
BseAI TCCGGA 1 cut(s) 398
BseBI CCWGG 1 cut(s) 500
BseGI GGATG 3 cut(s) 130, 136, 430
BseJI GATNNNNATC 2 cut(s) 153, 453
BseMII CTCAG 2 cut(s) 191, 303
BseRI GAGGAG 2 cut(s) 128, 149
BseXI GCAGC 3 cut(s) 286, 334, 337
Bsh1236I CGCG 1 cut(s) 295
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 2 cut(s) 182, 399
BslFI GGGAC 1 cut(s) 456
BsmAI GTCTC 1 cut(s) 284
BsmBI CGTCTC 1 cut(s) 284
BsmFI GGGAC 1 cut(s) 456
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 206
Bsp13I TCCGGA 1 cut(s) 398
Bsp143I GATC 1 cut(s) 515
BspCNI CTCAG 2 cut(s) 192, 304
BspEI TCCGGA 1 cut(s) 398
BspFNI CGCG 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 444
BspT104I TTCGAA 1 cut(s) 14
BssMI GATC 1 cut(s) 515
BssNI GRCGYC 2 cut(s) 240, 504
Bst2UI CCWGG 1 cut(s) 500
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 2 cut(s) 240, 504
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 2 cut(s) 200, 312
BstF5I GGATG 3 cut(s) 130, 136, 430
BstFNI CGCG 1 cut(s) 295
BstKTI GATC 1 cut(s) 518
BstMAI GTCTC 1 cut(s) 284
BstMBI GATC 1 cut(s) 515
BstMWI GCNNNNNNNGC 2 cut(s) 322, 489
BstNI CCWGG 1 cut(s) 500
BstNSI RCATGY 1 cut(s) 413
BstSCI CCNGG 1 cut(s) 498
BstUI CGCG 1 cut(s) 295
BstV1I GCAGC 3 cut(s) 286, 334, 337
BstX2I RGATCY 1 cut(s) 515
BstYI RGATCY 1 cut(s) 515
BtsCI GGATG 3 cut(s) 130, 136, 430
Cac8I GCNNGC 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 443
CseI GACGC 1 cut(s) 301
CviAII CATG 4 cut(s) 89, 317, 410, 458
CviJI RGCY 4 cut(s) 173, 188, 204, 432
CviKI_1 RGCY 4 cut(s) 173, 188, 204, 432
DdeI CTNAG 2 cut(s) 200, 312
DpnI GATC 1 cut(s) 517
DpnII GATC 1 cut(s) 515
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 443
Eco53kI GAGCTC 1 cut(s) 204
Eco57I CTGAAG 3 cut(s) 324, 381, 486
EcoICRI GAGCTC 1 cut(s) 204
EcoO109I RGGNCCY 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 206
Esp3I CGTCTC 1 cut(s) 284
FaeI CATG 4 cut(s) 92, 320, 413, 461
FaiI YATR 5 cut(s) 90, 221, 318, 411, 459
FaqI GGGAC 1 cut(s) 456
FatI CATG 4 cut(s) 88, 316, 409, 457
Fnu4HI GCNGC 3 cut(s) 300, 348, 351
FokI GGATG 3 cut(s) 137, 143, 437
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 3 cut(s) 300, 348, 351
FspBI CTAG 1 cut(s) 519
GluI GCNGC 3 cut(s) 300, 348, 351
HapII CCGG 2 cut(s) 182, 399
HgaI GACGC 1 cut(s) 301
Hin1I GRCGYC 2 cut(s) 240, 504
Hin1II CATG 4 cut(s) 92, 320, 413, 461
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 4 cut(s) 196, 263, 308, 395
HpaII CCGG 2 cut(s) 182, 399
HphI GGTGA 2 cut(s) 239, 346
Hpy166II GTNNAC 2 cut(s) 262, 508
Hpy188I TCNGA 6 cut(s) 54, 201, 208, 313, 361, 373
Hpy188III TCNNGA 2 cut(s) 399, 519
Hpy8I GTNNAC 2 cut(s) 262, 508
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 2 cut(s) 49, 461
HpyCH4IV ACGT 2 cut(s) 240, 504
HpyCH4V TGCA 1 cut(s) 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 322, 489
HpyF3I CTNAG 2 cut(s) 200, 312
HpySE526I ACGT 2 cut(s) 240, 504
Hsp92I GRCGYC 2 cut(s) 240, 504
Hsp92II CATG 4 cut(s) 92, 320, 413, 461
Kpn2I TCCGGA 1 cut(s) 398
Kzo9I GATC 1 cut(s) 515
LmnI GCTCC 3 cut(s) 170, 209, 322
LpnPI CCDG 5 cut(s) 195, 412, 459, 485, 512
Lsp1109I GCAGC 3 cut(s) 286, 334, 337
LweI GCATC 2 cut(s) 98, 327
MaeI CTAG 1 cut(s) 519
MaeII ACGT 2 cut(s) 240, 504
MaeIII GTNAC 1 cut(s) 460
MalI GATC 1 cut(s) 517
MboI GATC 1 cut(s) 515
MboII GAAGA 7 cut(s) 131, 152, 183, 317, 348, 374, 428
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 515
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 3 cut(s) 27, 380, 402
MluI ACGCGT 1 cut(s) 293
MlyI GAGTC 2 cut(s) 205, 257
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 9 cut(s) 106, 109, 115, 121, 127, 130, 178, 208, 277
MroI TCCGGA 1 cut(s) 398
MseI TTAA 2 cut(s) 165, 453
MspI CCGG 2 cut(s) 182, 399
MspR9I CCNGG 1 cut(s) 500
MunI CAATTG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 500
MvnI CGCG 1 cut(s) 295
MwoI GCNNNNNNNGC 2 cut(s) 322, 489
NdeII GATC 1 cut(s) 515
NlaIII CATG 4 cut(s) 92, 320, 413, 461
NlaIV GGNNCC 1 cut(s) 444
NspI RCATGY 1 cut(s) 413
NspV TTCGAA 1 cut(s) 14
PciI ACATGT 1 cut(s) 409
PfeI GAWTC 2 cut(s) 308, 395
PkrI GCNGC 3 cut(s) 301, 349, 352
PleI GAGTC 2 cut(s) 204, 257
PpsI GAGTC 2 cut(s) 204, 257
PpuMI RGGWCCY 1 cut(s) 443
PscI ACATGT 1 cut(s) 409
Psp124BI GAGCTC 1 cut(s) 206
Psp5II RGGWCCY 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 498
PspGI CCWGG 1 cut(s) 498
PspN4I GGNNCC 1 cut(s) 444
PspPI GGNCC 1 cut(s) 443
PspPPI RGGWCCY 1 cut(s) 443
PsuI RGATCY 1 cut(s) 515
SacI GAGCTC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 165, 453
SatI GCNGC 3 cut(s) 300, 348, 351
Sau3AI GATC 1 cut(s) 515
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 2 cut(s) 205, 257
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 1 cut(s) 206
SetI ASST 8 cut(s) 60, 175, 206, 243, 280, 448, 472, 507
SfaNI GCATC 2 cut(s) 98, 327
SfuI TTCGAA 1 cut(s) 14
SinI GGWCC 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 433
SmoI CTYRAG 1 cut(s) 433
Sse9I AATT 3 cut(s) 27, 380, 402
SspMI CTAG 1 cut(s) 519
SstI GAGCTC 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 498
TaiI ACGT 2 cut(s) 243, 507
TaqI TCGA 2 cut(s) 14, 194
TasI AATT 3 cut(s) 27, 380, 402
TfiI GAWTC 2 cut(s) 308, 395
Tru1I TTAA 2 cut(s) 165, 453
Tru9I TTAA 2 cut(s) 165, 453
TseI GCWGC 3 cut(s) 299, 347, 350
TspDTI ATGAA 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 443
XbaI TCTAGA 1 cut(s) 518
XceI RCATGY 1 cut(s) 413
XspI CTAG 1 cut(s) 519
ZraI GACGTC 2 cut(s) 241, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.