Rh5AG025100
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0020549
Physical Location & Seq
Reverse (-)
1735325 .. 1735843
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG025100.1

Sequence Viewer

Length: 519 bp
ATGTCTTTGTGTTCGAATGAGCAGTCAATCGGAGTTGGGTGTATTAGTGGTCAGAATGTTGCTGTGGATAGGGAGAACTTGAATGGGCATGATGAGAGTGTTTTGAGATGCGAGGAGGATGAGGATGAGGAGGAAGATGTGGATTTCAATCCTTTTCGTAAAGGAGCTGTTTCGCCAGAGGCTTCTTCGAGTCTGAGCTCCGAAGTGGAGGGTATAGATGGTGAAGTTGATGACGTCGGCAGAAACAATGGCGTTGACTCGTTGAATGTAGGTTGTGAGGGGGAGATGCATGCTGCTGAAGATTCTGAGCATGGGGAGGAAGAAATGGTGATGCAAACTGCTGCTGCTTCTTCTGAAGATGTGTCGGAAAATGAATTAGGGAACTTTGATTCCGGAATTAAACATGTGGAAGAAAAGGATGATGAGTCAAGTTTGGGACCTGATGTTAATCATGTTACTGAAGGTCAGTTGAGTAGCAAACAAAGCAGACACCAGGACGTCCACAATAGATCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6

Protein Analysis

172

Amino Acids

18.56

Weight (kDa)

4.13

Isoelectric Point (pI)

58.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020549)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0003041 RchiOBHm_Chr5g0003101 RchiOBHm_Chr5g0003151
rosa_multiflora Rmu_sc0000146.1_g000023
rosa_samantha Rh5AG025100 Rh5CG027900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 237, 501
AccIII TCCGGA 1 cut(s) 392
AcuI CTGAAG 3 cut(s) 318, 375, 480
AcyI GRCGYC 2 cut(s) 234, 498
AflIII ACRYGT 1 cut(s) 403
AgsI TTSAA 3 cut(s) 82, 148, 265
AjnI CCWGG 1 cut(s) 492
AloI GAACNNNNNNTCC 2 cut(s) 374, 406
AluBI AGCT 2 cut(s) 167, 198
AluI AGCT 2 cut(s) 167, 198
Alw21I GWGCWC 1 cut(s) 200
Aor13HI TCCGGA 1 cut(s) 392
ApeKI GCWGC 3 cut(s) 293, 341, 344
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 233, 340
AsuII TTCGAA 1 cut(s) 14
AvaII GGWCC 1 cut(s) 437
BanII GRGCYC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 200
BbvI GCAGC 3 cut(s) 280, 328, 331
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 1 cut(s) 494
BfaI CTAG 1 cut(s) 513
BglII AGATCT 1 cut(s) 509
BisI GCNGC 3 cut(s) 294, 342, 345
BlsI GCNGC 3 cut(s) 295, 343, 346
Bme1390I CCNGG 1 cut(s) 494
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 1 cut(s) 438
BmrFI CCNGG 1 cut(s) 494
BmsI GCATC 3 cut(s) 98, 276, 321
Bpu14I TTCGAA 1 cut(s) 14
BsaBI GATNNNNATC 2 cut(s) 147, 447
BsaHI GRCGYC 2 cut(s) 234, 498
BsaWI WCCGGW 1 cut(s) 392
Bse8I GATNNNNATC 2 cut(s) 147, 447
BseAI TCCGGA 1 cut(s) 392
BseBI CCWGG 1 cut(s) 494
BseGI GGATG 3 cut(s) 124, 130, 424
BseJI GATNNNNATC 2 cut(s) 147, 447
BseMII CTCAG 2 cut(s) 185, 297
BseRI GAGGAG 2 cut(s) 128, 143
BseXI GCAGC 3 cut(s) 280, 328, 331
BsiHKAI GWGCWC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 393
BslFI GGGAC 1 cut(s) 450
BsmFI GGGAC 1 cut(s) 450
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 200
Bsp13I TCCGGA 1 cut(s) 392
Bsp143I GATC 1 cut(s) 509
BspCNI CTCAG 2 cut(s) 186, 298
BspEI TCCGGA 1 cut(s) 392
BspLI GGNNCC 1 cut(s) 438
BspT104I TTCGAA 1 cut(s) 14
BssMI GATC 1 cut(s) 509
BssNI GRCGYC 2 cut(s) 234, 498
Bst2UI CCWGG 1 cut(s) 494
BstACI GRCGYC 2 cut(s) 234, 498
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 194, 306
BstF5I GGATG 3 cut(s) 124, 130, 424
BstKTI GATC 1 cut(s) 512
BstMBI GATC 1 cut(s) 509
BstMWI GCNNNNNNNGC 1 cut(s) 483
BstNI CCWGG 1 cut(s) 494
BstNSI RCATGY 2 cut(s) 293, 407
BstSCI CCNGG 1 cut(s) 492
BstV1I GCAGC 3 cut(s) 280, 328, 331
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
BtsCI GGATG 3 cut(s) 124, 130, 424
Cac8I GCNNGC 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 437
CviAII CATG 5 cut(s) 89, 290, 311, 404, 452
CviJI RGCY 3 cut(s) 167, 182, 198
CviKI_1 RGCY 3 cut(s) 167, 182, 198
DdeI CTNAG 2 cut(s) 194, 306
DpnI GATC 1 cut(s) 511
DpnII GATC 1 cut(s) 509
Ecl136II GAGCTC 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 198
Eco57I CTGAAG 3 cut(s) 318, 375, 480
EcoICRI GAGCTC 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 492
EcoT22I ATGCAT 1 cut(s) 291
EcoT38I GRGCYC 1 cut(s) 200
FaeI CATG 5 cut(s) 92, 293, 314, 407, 455
FaiI YATR 6 cut(s) 90, 215, 291, 312, 405, 453
FaqI GGGAC 1 cut(s) 450
FatI CATG 5 cut(s) 88, 289, 310, 403, 451
Fnu4HI GCNGC 3 cut(s) 294, 342, 345
FokI GGATG 3 cut(s) 131, 137, 431
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 3 cut(s) 294, 342, 345
FspBI CTAG 1 cut(s) 513
GluI GCNGC 3 cut(s) 294, 342, 345
HapII CCGG 1 cut(s) 393
Hin1I GRCGYC 2 cut(s) 234, 498
Hin1II CATG 5 cut(s) 92, 293, 314, 407, 455
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 5 cut(s) 190, 257, 302, 389, 425
HpaII CCGG 1 cut(s) 393
HphI GGTGA 2 cut(s) 233, 340
Hpy166II GTNNAC 2 cut(s) 256, 502
Hpy188I TCNGA 7 cut(s) 32, 54, 195, 202, 307, 355, 367
Hpy188III TCNNGA 2 cut(s) 393, 513
Hpy8I GTNNAC 2 cut(s) 256, 502
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 455
HpyCH4IV ACGT 2 cut(s) 234, 498
HpyCH4V TGCA 2 cut(s) 289, 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 483
HpyF3I CTNAG 2 cut(s) 194, 306
HpySE526I ACGT 2 cut(s) 234, 498
Hsp92I GRCGYC 2 cut(s) 234, 498
Hsp92II CATG 5 cut(s) 92, 293, 314, 407, 455
Kpn2I TCCGGA 1 cut(s) 392
Kzo9I GATC 1 cut(s) 509
LmnI GCTCC 2 cut(s) 164, 203
LpnPI CCDG 5 cut(s) 189, 406, 453, 479, 506
Lsp1109I GCAGC 3 cut(s) 280, 328, 331
LweI GCATC 3 cut(s) 98, 276, 321
MaeI CTAG 1 cut(s) 513
MaeII ACGT 2 cut(s) 234, 498
MaeIII GTNAC 1 cut(s) 454
MalI GATC 1 cut(s) 511
MboI GATC 1 cut(s) 509
MboII GAAGA 7 cut(s) 146, 177, 311, 332, 342, 368, 422
MflI RGATCY 1 cut(s) 509
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 2 cut(s) 374, 396
MlyI GAGTC 3 cut(s) 199, 251, 434
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 9 cut(s) 106, 109, 115, 121, 124, 172, 202, 271, 310
Mph1103I ATGCAT 1 cut(s) 291
MroI TCCGGA 1 cut(s) 392
MseI TTAA 2 cut(s) 399, 447
MspI CCGG 1 cut(s) 393
MspR9I CCNGG 1 cut(s) 494
MvaI CCWGG 1 cut(s) 494
MwoI GCNNNNNNNGC 1 cut(s) 483
NdeII GATC 1 cut(s) 509
NlaIII CATG 5 cut(s) 92, 293, 314, 407, 455
NlaIV GGNNCC 1 cut(s) 438
NsiI ATGCAT 1 cut(s) 291
NspI RCATGY 2 cut(s) 293, 407
NspV TTCGAA 1 cut(s) 14
PaeI GCATGC 1 cut(s) 293
PciI ACATGT 1 cut(s) 403
PfeI GAWTC 2 cut(s) 302, 389
PkrI GCNGC 3 cut(s) 295, 343, 346
PleI GAGTC 3 cut(s) 198, 251, 433
PpsI GAGTC 3 cut(s) 198, 251, 433
PpuMI RGGWCCY 1 cut(s) 437
PscI ACATGT 1 cut(s) 403
Psp124BI GAGCTC 1 cut(s) 200
Psp5II RGGWCCY 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 492
PspGI CCWGG 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 437
PspPPI RGGWCCY 1 cut(s) 437
PsuI RGATCY 1 cut(s) 509
SacI GAGCTC 1 cut(s) 200
SaqAI TTAA 2 cut(s) 399, 447
SatI GCNGC 3 cut(s) 294, 342, 345
Sau3AI GATC 1 cut(s) 509
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 3 cut(s) 199, 251, 434
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 1 cut(s) 200
SetI ASST 7 cut(s) 169, 200, 237, 274, 442, 466, 501
SfaNI GCATC 3 cut(s) 98, 276, 321
SfuI TTCGAA 1 cut(s) 14
SinI GGWCC 1 cut(s) 437
SphI GCATGC 1 cut(s) 293
Sse9I AATT 2 cut(s) 374, 396
SspMI CTAG 1 cut(s) 513
SstI GAGCTC 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 492
TaiI ACGT 2 cut(s) 237, 501
TaqI TCGA 2 cut(s) 14, 188
TasI AATT 2 cut(s) 374, 396
TfiI GAWTC 2 cut(s) 302, 389
Tru1I TTAA 2 cut(s) 399, 447
Tru9I TTAA 2 cut(s) 399, 447
TseI GCWGC 3 cut(s) 293, 341, 344
TspDTI ATGAA 1 cut(s) 387
VpaK11BI GGWCC 1 cut(s) 437
XbaI TCTAGA 1 cut(s) 512
XceI RCATGY 2 cut(s) 293, 407
XspI CTAG 1 cut(s) 513
ZraI GACGTC 2 cut(s) 235, 499
Zsp2I ATGCAT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.