RchiOBHm_Chr5g0003151
MYB Family

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0020549
Physical Location & Seq
Reverse (-)
1895577 .. 1896850
1274 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28447

Sequence Viewer

Length: 531 bp
ATGTCTTTGTGTTCGAATGAGCAGTCAATCGGAGTTGGGTGTATTAGTGGTCAGAAGGTTGCTGTGGATAGGGAGAACTTGAATGGACATGATGAGAGTGTTTTGAGATGCGAGGAGGAAGAGGATGAGGATGAGGATGAGGAGGAAGATGTGGATTTCAATCCTTTTCTTAAAGGAGCTGTTTCGCCAGAGGCTTCTTCGAGTCTGAGCTCCGAAGTGGAGGGTATAGATGGTGAAGCTGATGACGTCGGTGGAAACGATGGCGTTGACTCGTTGAATGTAGGTTGTGAGGGGGAGACGCGTGCTGCTGAAGATTCTGAGCATGGGGAGCAAGAAATGGTGATGCAAACTGCTGCTGCTTCTTCTGAAGATGTGTCGGAAAATGAATTAGGGAACTTTGATTCCGGAATTGAACATGTGGAAGAAAAGGATGATGGCTCAAGTTTGGGACCTGATGTTAATCATGTTACTGAAGGTCAGTTAAGTAGCAAACAAAGCAGACACCAGGACGTCCACAATAGATCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_6

Protein Analysis

176

Amino Acids

18.83

Weight (kDa)

4.05

Isoelectric Point (pI)

58.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020549)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0003041 RchiOBHm_Chr5g0003101 RchiOBHm_Chr5g0003151
rosa_multiflora Rmu_sc0000146.1_g000023
rosa_samantha Rh5AG025100 Rh5CG027900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 249, 513
AccII CGCG 1 cut(s) 301
AccIII TCCGGA 1 cut(s) 404
AcuI CTGAAG 3 cut(s) 330, 387, 492
AcyI GRCGYC 2 cut(s) 246, 510
AflIII ACRYGT 2 cut(s) 299, 415
AgsI TTSAA 4 cut(s) 82, 160, 277, 413
AjnI CCWGG 1 cut(s) 504
AloI GAACNNNNNNTCC 2 cut(s) 386, 418
AluBI AGCT 3 cut(s) 179, 210, 239
AluI AGCT 3 cut(s) 179, 210, 239
Alw21I GWGCWC 1 cut(s) 212
Alw26I GTCTC 1 cut(s) 290
Aor13HI TCCGGA 1 cut(s) 404
ApeKI GCWGC 3 cut(s) 305, 353, 356
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
AspS9I GGNCC 1 cut(s) 449
AsuHPI GGTGA 2 cut(s) 245, 352
AsuII TTCGAA 1 cut(s) 14
AvaII GGWCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 212
Bbv12I GWGCWC 1 cut(s) 212
BbvI GCAGC 3 cut(s) 292, 340, 343
BccI CCATC 3 cut(s) 224, 254, 428
BciT130I CCWGG 1 cut(s) 506
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 1 cut(s) 525
BglII AGATCT 1 cut(s) 521
BisI GCNGC 3 cut(s) 306, 354, 357
BlsI GCNGC 3 cut(s) 307, 355, 358
Bme1390I CCNGG 1 cut(s) 506
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 1 cut(s) 449
BmiI GGNNCC 1 cut(s) 450
BmrFI CCNGG 1 cut(s) 506
BmsI GCATC 2 cut(s) 98, 333
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 424
BsaBI GATNNNNATC 2 cut(s) 159, 459
BsaHI GRCGYC 2 cut(s) 246, 510
BsaWI WCCGGW 1 cut(s) 404
Bse8I GATNNNNATC 2 cut(s) 159, 459
BseAI TCCGGA 1 cut(s) 404
BseBI CCWGG 1 cut(s) 506
BseGI GGATG 4 cut(s) 130, 136, 142, 436
BseJI GATNNNNATC 2 cut(s) 159, 459
BseMII CTCAG 2 cut(s) 197, 309
BseRI GAGGAG 2 cut(s) 128, 155
BseXI GCAGC 3 cut(s) 292, 340, 343
Bsh1236I CGCG 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 212
BsiSI CCGG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 462
BsmAI GTCTC 1 cut(s) 290
BsmBI CGTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 462
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 212
Bsp13I TCCGGA 1 cut(s) 404
Bsp143I GATC 1 cut(s) 521
BspCNI CTCAG 2 cut(s) 198, 310
BspEI TCCGGA 1 cut(s) 404
BspFNI CGCG 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 450
BspT104I TTCGAA 1 cut(s) 14
BssMI GATC 1 cut(s) 521
BssNI GRCGYC 2 cut(s) 246, 510
Bst2UI CCWGG 1 cut(s) 506
Bst6I CTCTTC 1 cut(s) 114
BstACI GRCGYC 2 cut(s) 246, 510
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 2 cut(s) 206, 318
BstF5I GGATG 4 cut(s) 130, 136, 142, 436
BstFNI CGCG 1 cut(s) 301
BstKTI GATC 1 cut(s) 524
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 1 cut(s) 521
BstMWI GCNNNNNNNGC 2 cut(s) 328, 495
BstNI CCWGG 1 cut(s) 506
BstNSI RCATGY 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 504
BstUI CGCG 1 cut(s) 301
BstV1I GCAGC 3 cut(s) 292, 340, 343
BstX2I RGATCY 1 cut(s) 521
BstYI RGATCY 1 cut(s) 521
BtsCI GGATG 4 cut(s) 130, 136, 142, 436
Cac8I GCNNGC 1 cut(s) 303
Cfr13I GGNCC 1 cut(s) 449
CseI GACGC 1 cut(s) 307
CviAII CATG 4 cut(s) 89, 323, 416, 464
CviJI RGCY 5 cut(s) 179, 194, 210, 239, 438
CviKI_1 RGCY 5 cut(s) 179, 194, 210, 239, 438
DdeI CTNAG 2 cut(s) 206, 318
DpnI GATC 1 cut(s) 523
DpnII GATC 1 cut(s) 521
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Ecl136II GAGCTC 1 cut(s) 210
Eco24I GRGCYC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 449
Eco53kI GAGCTC 1 cut(s) 210
Eco57I CTGAAG 3 cut(s) 330, 387, 492
EcoICRI GAGCTC 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 504
EcoT38I GRGCYC 1 cut(s) 212
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 4 cut(s) 92, 326, 419, 467
FaiI YATR 5 cut(s) 90, 227, 324, 417, 465
FaqI GGGAC 1 cut(s) 462
FatI CATG 4 cut(s) 88, 322, 415, 463
Fnu4HI GCNGC 3 cut(s) 306, 354, 357
FokI GGATG 4 cut(s) 137, 143, 149, 443
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 3 cut(s) 306, 354, 357
FspBI CTAG 1 cut(s) 525
GluI GCNGC 3 cut(s) 306, 354, 357
HapII CCGG 1 cut(s) 405
HgaI GACGC 1 cut(s) 307
Hin1I GRCGYC 2 cut(s) 246, 510
Hin1II CATG 4 cut(s) 92, 326, 419, 467
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 4 cut(s) 202, 269, 314, 401
HpaII CCGG 1 cut(s) 405
HphI GGTGA 2 cut(s) 245, 352
Hpy166II GTNNAC 2 cut(s) 268, 514
Hpy188I TCNGA 7 cut(s) 32, 54, 207, 214, 319, 367, 379
Hpy188III TCNNGA 2 cut(s) 405, 525
Hpy8I GTNNAC 2 cut(s) 268, 514
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 2 cut(s) 49, 467
HpyCH4IV ACGT 2 cut(s) 246, 510
HpyCH4V TGCA 1 cut(s) 346
HpyF10VI GCNNNNNNNGC 2 cut(s) 328, 495
HpyF3I CTNAG 2 cut(s) 206, 318
HpySE526I ACGT 2 cut(s) 246, 510
Hsp92I GRCGYC 2 cut(s) 246, 510
Hsp92II CATG 4 cut(s) 92, 326, 419, 467
Kpn2I TCCGGA 1 cut(s) 404
Kzo9I GATC 1 cut(s) 521
LmnI GCTCC 3 cut(s) 176, 215, 328
LpnPI CCDG 5 cut(s) 201, 418, 465, 491, 518
Lsp1109I GCAGC 3 cut(s) 292, 340, 343
LweI GCATC 2 cut(s) 98, 333
MaeI CTAG 1 cut(s) 525
MaeII ACGT 2 cut(s) 246, 510
MaeIII GTNAC 1 cut(s) 466
MalI GATC 1 cut(s) 523
MboI GATC 1 cut(s) 521
MboII GAAGA 7 cut(s) 131, 158, 189, 323, 354, 380, 434
MflI RGATCY 1 cut(s) 521
MhlI GDGCHC 1 cut(s) 212
MluCI AATT 2 cut(s) 386, 408
MluI ACGCGT 1 cut(s) 299
MlyI GAGTC 2 cut(s) 211, 263
MmeI TCCRAC 1 cut(s) 357
MroI TCCGGA 1 cut(s) 404
MseI TTAA 3 cut(s) 171, 459, 482
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 1 cut(s) 506
MvaI CCWGG 1 cut(s) 506
MvnI CGCG 1 cut(s) 301
MwoI GCNNNNNNNGC 2 cut(s) 328, 495
NdeII GATC 1 cut(s) 521
NlaIII CATG 4 cut(s) 92, 326, 419, 467
NlaIV GGNNCC 1 cut(s) 450
NspI RCATGY 1 cut(s) 419
NspV TTCGAA 1 cut(s) 14
PciI ACATGT 1 cut(s) 415
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 2 cut(s) 314, 401
PkrI GCNGC 3 cut(s) 307, 355, 358
PleI GAGTC 2 cut(s) 210, 263
PpsI GAGTC 2 cut(s) 210, 263
PpuMI RGGWCCY 1 cut(s) 449
PscI ACATGT 1 cut(s) 415
Psp124BI GAGCTC 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 504
PspGI CCWGG 1 cut(s) 504
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 1 cut(s) 449
PspPPI RGGWCCY 1 cut(s) 449
PsuI RGATCY 1 cut(s) 521
SacI GAGCTC 1 cut(s) 212
SaqAI TTAA 3 cut(s) 171, 459, 482
SatI GCNGC 3 cut(s) 306, 354, 357
Sau3AI GATC 1 cut(s) 521
Sau96I GGNCC 1 cut(s) 449
SchI GAGTC 2 cut(s) 211, 263
ScrFI CCNGG 1 cut(s) 506
SduI GDGCHC 1 cut(s) 212
SetI ASST 9 cut(s) 60, 181, 212, 241, 249, 286, 454, 478, 513
SfaNI GCATC 2 cut(s) 98, 333
SfuI TTCGAA 1 cut(s) 14
SinI GGWCC 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
Sse9I AATT 2 cut(s) 386, 408
SspMI CTAG 1 cut(s) 525
SstI GAGCTC 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 504
TaiI ACGT 2 cut(s) 249, 513
TaqI TCGA 2 cut(s) 14, 200
TasI AATT 2 cut(s) 386, 408
TfiI GAWTC 2 cut(s) 314, 401
Tru1I TTAA 3 cut(s) 171, 459, 482
Tru9I TTAA 3 cut(s) 171, 459, 482
TseI GCWGC 3 cut(s) 305, 353, 356
TspDTI ATGAA 1 cut(s) 399
VpaK11BI GGWCC 1 cut(s) 449
XbaI TCTAGA 1 cut(s) 524
XceI RCATGY 1 cut(s) 419
XspI CTAG 1 cut(s) 525
ZraI GACGTC 2 cut(s) 247, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.