RchiOBHm_Chr5g0005401

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
3457541 .. 3460841
3301 bp
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UTR
Exon/CDS
Intron
PRQ28663

Sequence Viewer

Length: 330 bp
ATGGATACGGGAAGGAGAGCAGTGCTTGATTGGGCAACACGCTTTGACATTATTCAAGGTGTTGCTAGAGGGCATCTTTATTTCCATCATGATTCCTATGTGAAGGTAATACATAGAGATCTGAAAGTCAGCAACATTCTCTTGGATGAGAAAATGAGTCCAAAAATTTCAGATTTTGGATTGGCACGCATAGTTGAAGGGACTCAAAATCTAGAAAATACTCAAAAAGTTGTGGGAACACGGTTTGGGGTATTGGTCTTGGAGATTATTAGCAGCAAGAAGAATACCAGCTTCTCTTTATATGACAAACAGCTAGGCTTTCTAGGCTAA

Protein Analysis

109

Amino Acids

12.37

Weight (kDa)

9.34

Isoelectric Point (pI)

27.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 9 - 95 1.2e-11 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 16 - 81 5.5e-14 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0025002)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0005401 RchiOBHm_Chr5g0005481
rosa_roxburghii Rroxscaffold_1G00070330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 165
AgsI TTSAA 2 cut(s) 56, 197
AluBI AGCT 2 cut(s) 291, 313
AluI AGCT 2 cut(s) 291, 313
ApeKI GCWGC 1 cut(s) 273
ApoI RAATTY 1 cut(s) 165
BbvI GCAGC 1 cut(s) 285
BccI CCATC 1 cut(s) 93
BfaI CTAG 4 cut(s) 66, 212, 314, 323
BglII AGATCT 1 cut(s) 118
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
BmsI GCATC 1 cut(s) 82
BseGI GGATG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 285
BslFI GGGAC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 118
BspHI TCATGA 1 cut(s) 88
BssMI GATC 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 187
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 324
BstV1I GCAGC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 88
CviAII CATG 1 cut(s) 89
CviJI RGCY 4 cut(s) 291, 313, 318, 327
CviKI_1 RGCY 4 cut(s) 291, 313, 318, 327
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
FaeI CATG 1 cut(s) 92
FaiI YATR 6 cut(s) 90, 99, 114, 191, 301, 303
FaqI GGGAC 1 cut(s) 214
FatI CATG 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 274
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 4 cut(s) 66, 212, 314, 323
GluI GCNGC 1 cut(s) 274
Hin1II CATG 1 cut(s) 92
HinfI GANTC 3 cut(s) 92, 157, 202
Hpy188I TCNGA 2 cut(s) 123, 172
Hpy188III TCNNGA 2 cut(s) 89, 212
HpyAV CCTTC 3 cut(s) 6, 97, 191
HpyCH4III ACNGT 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 324
Hsp92II CATG 1 cut(s) 92
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 1 cut(s) 301
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 1 cut(s) 82
MaeI CTAG 4 cut(s) 66, 212, 314, 323
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 292
MflI RGATCY 1 cut(s) 118
MluCI AATT 1 cut(s) 165
MlyI GAGTC 2 cut(s) 166, 196
MnlI CCTC 1 cut(s) 62
MwoI GCNNNNNNNGC 1 cut(s) 324
NdeII GATC 1 cut(s) 118
NlaIII CATG 1 cut(s) 92
PagI TCATGA 1 cut(s) 88
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 2 cut(s) 165, 196
PpsI GAGTC 2 cut(s) 165, 196
PsuI RGATCY 1 cut(s) 118
SatI GCNGC 1 cut(s) 274
Sau3AI GATC 1 cut(s) 118
SchI GAGTC 2 cut(s) 166, 196
SetI ASST 4 cut(s) 61, 108, 293, 315
SfaNI GCATC 1 cut(s) 82
Sse9I AATT 1 cut(s) 165
SspMI CTAG 4 cut(s) 66, 212, 314, 323
TaaI ACNGT 1 cut(s) 243
TasI AATT 1 cut(s) 165
TfiI GAWTC 1 cut(s) 92
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 273
TspRI CASTG 1 cut(s) 27
XapI RAATTY 1 cut(s) 165
XbaI TCTAGA 1 cut(s) 211
XspI CTAG 4 cut(s) 66, 212, 314, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.