RchiOBHm_Chr5g0005481

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
3524133 .. 3524369
237 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28670

Sequence Viewer

Length: 237 bp
ATGAAGAGAGTAATGCTTGATTGGGCTATGCGCTTTTATATTATTCAGGGTGTTGCTAGAGGGCTTCTTTATCTCCATCATGATTCCTATGGGAAGGTGATACATAGAGATTTAAAAGTCAATAACATTCTCTTGGATGAGAAAATGAATCCAAAAATCTCAGATTTTGGATTGGCACACATAGTTGAAGAAACACAGAGTCTAGAAAATACTCAGAAGGTTGTTGGAACACGGTGA

Protein Analysis

78

Amino Acids

9.1

Weight (kDa)

9.1

Isoelectric Point (pI)

29.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 8 - 78 3.4e-16 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 8 - 71 1.7e-12 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0025002)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0005401 RchiOBHm_Chr5g0005481
rosa_roxburghii Rroxscaffold_1G00070330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 188
AspLEI GCGC 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 109
BccI CCATC 1 cut(s) 84
BfaI CTAG 2 cut(s) 57, 203
BseGI GGATG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 174, 227
BspCNI CTCAG 2 cut(s) 173, 226
BspHI TCATGA 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 160, 213
BstF5I GGATG 1 cut(s) 142
BstHHI GCGC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 142
CciI TCATGA 1 cut(s) 79
CfoI GCGC 1 cut(s) 33
CviAII CATG 1 cut(s) 80
CviJI RGCY 2 cut(s) 26, 64
CviKI_1 RGCY 2 cut(s) 26, 64
DdeI CTNAG 2 cut(s) 160, 213
DraI TTTAAA 1 cut(s) 114
FaeI CATG 1 cut(s) 83
FaiI YATR 6 cut(s) 29, 39, 81, 90, 105, 182
FatI CATG 1 cut(s) 79
FokI GGATG 1 cut(s) 149
FspBI CTAG 2 cut(s) 57, 203
GlaI GCGC 1 cut(s) 32
HhaI GCGC 1 cut(s) 33
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 3 cut(s) 83, 148, 199
HphI GGTGA 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 163, 216
Hpy188III TCNNGA 2 cut(s) 80, 203
HpyAV CCTTC 2 cut(s) 88, 211
HpyCH4III ACNGT 1 cut(s) 234
HpyF3I CTNAG 2 cut(s) 160, 213
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 1 cut(s) 31
LpnPI CCDG 1 cut(s) 32
MaeI CTAG 2 cut(s) 57, 203
MboII GAAGA 2 cut(s) 16, 200
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 1 cut(s) 53
MseI TTAA 1 cut(s) 113
NlaIII CATG 1 cut(s) 83
PagI TCATGA 1 cut(s) 79
PfeI GAWTC 2 cut(s) 83, 148
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
SaqAI TTAA 1 cut(s) 113
SchI GAGTC 1 cut(s) 208
SetI ASST 2 cut(s) 99, 222
SgeI CNNG 6 cut(s) 29, 59, 69, 92, 145, 215
SspMI CTAG 2 cut(s) 57, 203
TaaI ACNGT 1 cut(s) 234
TfiI GAWTC 2 cut(s) 83, 148
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TspDTI ATGAA 2 cut(s) 17, 161
XbaI TCTAGA 1 cut(s) 202
XspI CTAG 2 cut(s) 57, 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.