RchiOBHm_Chr5g0005591

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0022176
Physical Location & Seq
Reverse (-)
3594784 .. 3595182
399 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28679

Sequence Viewer

Length: 285 bp
ATGGGAGCTGATCATTTCATATGGCAGAGCTTTGATTATCCTGGTGATACAATGCTGCCTAACATGGTGCTGGGATACAATAGAAAATCTGGAAAGAGCAGTGTCTTGACAGCCTGGAAAAATGAGAATGATCCATCCACTGGGATATTCTCGGCTGCAGGTGGATTGGTAAAGGAGATGCCAGGACAAGTAATCAAATGGATGAATCGATCAACTCCCAACTGGAAAAGTGGGCCATGGGATCAAAGTTCATCGGCATACATGATATGGATAACCAATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

94

Amino Acids

10.53

Weight (kDa)

8.03

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 4 - 40 4.6e-11 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022176)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03435
rosa_chinensis RchiOBHm_Chr5g0005591
rosa_samantha Rh5CG051400
rosa_wichuraiana Rw5G004360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 149
AccB7I CCANNNNNTGG 1 cut(s) 140
AclWI GGATC 2 cut(s) 125, 249
AfiI CCNNNNNNNGG 1 cut(s) 140
AjnI CCWGG 3 cut(s) 40, 113, 181
AluBI AGCT 2 cut(s) 8, 30
AluI AGCT 2 cut(s) 8, 30
AlwI GGATC 2 cut(s) 125, 249
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 55, 155
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 56
BbvI GCAGC 2 cut(s) 42, 142
BccI CCATC 1 cut(s) 142
BciT130I CCWGG 3 cut(s) 42, 115, 183
BciVI GTATCC 1 cut(s) 68
BclI TGATCA 1 cut(s) 10
BfmI CTRYAG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 149
BfuI GTATCC 1 cut(s) 68
BisI GCNGC 2 cut(s) 56, 156
BlsI GCNGC 2 cut(s) 57, 157
Bme1390I CCNGG 3 cut(s) 42, 115, 183
BmgT120I GGNCC 1 cut(s) 233
BmrFI CCNGG 3 cut(s) 42, 115, 183
BmrI ACTGGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 168
BmuI ACTGGG 1 cut(s) 150
Bsa29I ATCGAT 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 236
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 145, 227
BseBI CCWGG 3 cut(s) 42, 115, 183
BseCI ATCGAT 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 236
BseGI GGATG 2 cut(s) 134, 207
BseLI CCNNNNNNNGG 1 cut(s) 140
BseNI ACTGG 2 cut(s) 145, 227
BseXI GCAGC 2 cut(s) 42, 142
BseYI CCCAGC 1 cut(s) 70
BshFI GGCC 1 cut(s) 235
BshVI ATCGAT 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 140
BsnI GGCC 1 cut(s) 235
Bsp143I GATC 4 cut(s) 10, 130, 209, 241
Bsp19I CCATGG 1 cut(s) 236
BspANI GGCC 1 cut(s) 235
BspDI ATCGAT 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 2 cut(s) 125, 249
BsrI ACTGG 2 cut(s) 145, 227
BssECI CCNNGG 1 cut(s) 236
BssMI GATC 4 cut(s) 10, 130, 209, 241
BssT1I CCWWGG 1 cut(s) 236
Bst2UI CCWGG 3 cut(s) 42, 115, 183
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 134, 207
BstKTI GATC 4 cut(s) 13, 133, 212, 244
BstMBI GATC 4 cut(s) 10, 130, 209, 241
BstNI CCWGG 3 cut(s) 42, 115, 183
BstSCI CCNGG 3 cut(s) 40, 113, 181
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 42, 142
Bsu15I ATCGAT 1 cut(s) 208
BsuI GTATCC 1 cut(s) 68
BsuRI GGCC 1 cut(s) 235
BsuTUI ATCGAT 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 236
BtsCI GGATG 2 cut(s) 134, 207
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 2 cut(s) 106, 138
BveI ACCTGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 233
ClaI ATCGAT 1 cut(s) 208
CviAII CATG 3 cut(s) 64, 237, 262
CviJI RGCY 5 cut(s) 8, 30, 113, 155, 235
CviKI_1 RGCY 5 cut(s) 8, 30, 113, 155, 235
DpnI GATC 4 cut(s) 12, 132, 211, 243
DpnII GATC 4 cut(s) 10, 130, 209, 241
Eco130I CCWWGG 1 cut(s) 236
EcoRII CCWGG 3 cut(s) 40, 113, 181
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 3 cut(s) 67, 240, 265
FaiI YATR 7 cut(s) 20, 22, 65, 238, 259, 263, 268
FatI CATG 3 cut(s) 63, 236, 261
FauNDI CATATG 1 cut(s) 20
FbaI TGATCA 1 cut(s) 10
Fnu4HI GCNGC 2 cut(s) 56, 156
FokI GGATG 2 cut(s) 121, 214
Fsp4HI GCNGC 2 cut(s) 56, 156
GluI GCNGC 2 cut(s) 56, 156
GsaI CCCAGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 235
Hin1II CATG 3 cut(s) 67, 240, 265
HinfI GANTC 1 cut(s) 205
HphI GGTGA 1 cut(s) 56
Hpy188III TCNNGA 2 cut(s) 90, 106
HpyCH4V TGCA 1 cut(s) 158
Hsp92II CATG 3 cut(s) 67, 240, 265
Ksp22I TGATCA 1 cut(s) 10
Kzo9I GATC 4 cut(s) 10, 130, 209, 241
LmnI GCTCC 1 cut(s) 5
Lsp1109I GCAGC 2 cut(s) 42, 142
LweI GCATC 1 cut(s) 168
MalI GATC 4 cut(s) 12, 132, 211, 243
MboI GATC 4 cut(s) 10, 130, 209, 241
MspR9I CCNGG 3 cut(s) 42, 115, 183
MvaI CCWGG 3 cut(s) 42, 115, 183
NcoI CCATGG 1 cut(s) 236
NdeI CATATG 1 cut(s) 20
NdeII GATC 4 cut(s) 10, 130, 209, 241
NlaIII CATG 3 cut(s) 67, 240, 265
NmeAIII GCCGAG 1 cut(s) 131
PaqCI CACCTGC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 205
PflMI CCANNNNNTGG 1 cut(s) 140
PkrI GCNGC 2 cut(s) 57, 157
Psp6I CCWGG 3 cut(s) 40, 113, 181
PspFI CCCAGC 1 cut(s) 70
PspGI CCWGG 3 cut(s) 40, 113, 181
PspPI GGNCC 1 cut(s) 233
PstI CTGCAG 1 cut(s) 160
SatI GCNGC 2 cut(s) 56, 156
Sau3AI GATC 4 cut(s) 10, 130, 209, 241
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 3 cut(s) 42, 115, 183
SetI ASST 3 cut(s) 10, 32, 163
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 40, 113, 181
StyI CCWWGG 1 cut(s) 236
TaqI TCGA 1 cut(s) 208
TfiI GAWTC 1 cut(s) 205
TscAI CASTG 2 cut(s) 106, 145
TseI GCWGC 2 cut(s) 55, 155
TspDTI ATGAA 3 cut(s) 7, 218, 240
TspRI CASTG 2 cut(s) 106, 145
Van91I CCANNNNNTGG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.