RchiOBHm_Chr5g0011701

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
7770876 .. 7771909
1034 bp
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UTR
Exon/CDS
Intron
PRQ29232

Sequence Viewer

Length: 174 bp
ATGGGCCTGATGGTACTTGGGCTGGGGGTTTTACCCTTGGTCTATTATGGTTTGTTTTTTATGTTAAAGTTTTCAGTTATTATTTTTAGGGTAAAAAATACAAACAGTACCCAAATTATGGTCGATTCCGAATTTCTGTACCCAAGTTTTCAAAACTATCACTTTGGTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.59

Weight (kDa)

8.12

Isoelectric Point (pI)

13.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022764)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0011701
rosa_multiflora Rmu_sc0000675.1_g000032 Rmu_sc0038132.1_g000001
rosa_roxburghii Rroxscaffold_7G00188920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 167
AccB1I GGYRCC 1 cut(s) 167
AccB7I CCANNNNNTGG 1 cut(s) 118
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 4 cut(s) 15, 109, 140, 169
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 1 cut(s) 152
AoxI GGCC 1 cut(s) 4
ApoI RAATTY 1 cut(s) 131
Asp718I GGTACC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 4
BaeI ACNNNNGTAYC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 167
BccI CCATC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 36
Bsc4I CCNNNNNNNGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 118
BseYI CCCAGC 1 cut(s) 22
BshFI GGCC 1 cut(s) 6
BshNI GGYRCC 1 cut(s) 167
BslI CCNNNNNNNGG 1 cut(s) 118
BsnI GGCC 1 cut(s) 6
BspANI GGCC 1 cut(s) 6
BspLI GGNNCC 1 cut(s) 169
BspT107I GGYRCC 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 107
BsuRI GGCC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 4 cut(s) 14, 108, 139, 168
CviJI RGCY 2 cut(s) 6, 22
CviKI_1 RGCY 2 cut(s) 6, 22
CviQI GTAC 4 cut(s) 14, 108, 139, 168
Eco130I CCWWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaiI YATR 3 cut(s) 48, 62, 119
GsaI CCCAGC 1 cut(s) 26
HaeIII GGCC 1 cut(s) 6
HinfI GANTC 1 cut(s) 125
Hpy188I TCNGA 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 107
KpnI GGTACC 1 cut(s) 171
LpnPI CCDG 2 cut(s) 8, 20
MluCI AATT 2 cut(s) 114, 131
MseI TTAA 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 4 cut(s) 15, 109, 140, 169
RsaNI GTAC 4 cut(s) 14, 108, 139, 168
SaqAI TTAA 1 cut(s) 65
Sau96I GGNCC 1 cut(s) 4
SetI ASST 1 cut(s) 173
SgeI CNNG 5 cut(s) 19, 29, 35, 49, 156
Sse9I AATT 2 cut(s) 114, 131
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 1 cut(s) 123
TasI AATT 2 cut(s) 114, 131
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
Van91I CCANNNNNTGG 1 cut(s) 118
XapI RAATTY 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.