Rroxscaffold_7G00188920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0022764
Physical Location & Seq
Reverse (-)
28680050 .. 28693679
13630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188920.1

Sequence Viewer

Length: 468 bp
ATGGGCGAAGCTATAACCCAAAGCCAAGTAGACTTAATTTTGGGCCGCAAGATTCATGTGATTTCCCCAAGATTTTTAGAAACTTCAATCTCATCCTTCTCTGCTAGGGCACTTTCCTTTTGCTATCCCATTCTCCAGTTTCTAATATGCCATTTTGAGTACGAGATGTATTCTAATTGGGAAAAAAATACAAACAGTACCCAACTTATGGCCGACTCCGAATTTCTGTACCCAAGTTTTCAAAACTATCACAATGGTACCCAGACAAACCAATCTTCGGTGGCGAGCTACAACGTCGTGATCGCCGGGAAGGTCTCCGGGGCGGAAGTGGAAGCAGCCACCGAAGCGAGAGAGGTCGTCGGTGGTTTAGGTGAGCCGGAAGGGGACGAAGTTCAAGGAGAGGGAGAAGAACAAGTCGGTGAAAAAGACGTACAAGGAGAGAATGGCAGAGCTGACCGGGGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.04

Weight (kDa)

4.46

Isoelectric Point (pI)

27.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022764)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0011701
rosa_multiflora Rmu_sc0000675.1_g000032 Rmu_sc0038132.1_g000001
rosa_roxburghii Rroxscaffold_7G00188920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 257
AccB1I GGYRCC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 208
AccI GTMKAC 1 cut(s) 30
AciI CCGC 2 cut(s) 46, 323
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 5 cut(s) 161, 199, 230, 259, 432
AfiI CCNNNNNNNGG 2 cut(s) 208, 277
AgsI TTSAA 3 cut(s) 87, 242, 395
AluBI AGCT 3 cut(s) 11, 288, 452
AluI AGCT 3 cut(s) 11, 288, 452
Alw26I GTCTC 1 cut(s) 319
AoxI GGCC 2 cut(s) 43, 210
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 221
Asp718I GGTACC 1 cut(s) 257
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 3 cut(s) 307, 319, 458
AsuHPI GGTGA 2 cut(s) 383, 431
BaeGI GKGCMC 1 cut(s) 112
BaeI ACNNNNGTAYC 2 cut(s) 241, 274
BanI GGYRCC 1 cut(s) 257
BbvI GCAGC 1 cut(s) 347
BcnI CCSGG 3 cut(s) 307, 319, 458
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 105
BisI GCNGC 2 cut(s) 46, 336
BlsI GCNGC 2 cut(s) 47, 337
Bme1390I CCNGG 3 cut(s) 307, 319, 458
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 3 cut(s) 307, 319, 458
BpmI CTGGAG 1 cut(s) 119
BpuMI CCSGG 3 cut(s) 307, 319, 458
BsaI GGTCTC 1 cut(s) 319
BsaJI CCNNGG 2 cut(s) 318, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 277
Bse1I ACTGG 1 cut(s) 136
BseDI CCNNGG 2 cut(s) 318, 457
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 2 cut(s) 208, 277
BseNI ACTGG 1 cut(s) 136
BseSI GKGCMC 1 cut(s) 112
BseXI GCAGC 1 cut(s) 347
BshFI GGCC 2 cut(s) 45, 212
BshNI GGYRCC 1 cut(s) 257
BsiSI CCGG 4 cut(s) 306, 318, 377, 457
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 2 cut(s) 208, 277
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 398
BsnI GGCC 2 cut(s) 45, 212
Bso31I GGTCTC 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 112
Bsp143I GATC 1 cut(s) 300
BspACI CCGC 2 cut(s) 46, 323
BspANI GGCC 2 cut(s) 45, 212
BspLI GGNNCC 1 cut(s) 259
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 319
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 318, 457
BssMI GATC 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 286
BstF5I GGATG 1 cut(s) 92
BstKTI GATC 1 cut(s) 303
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 1 cut(s) 300
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstSCI CCNGG 3 cut(s) 305, 317, 456
BstSLI GKGCMC 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 347
BsuRI GGCC 2 cut(s) 45, 212
BtsCI GGATG 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 5 cut(s) 160, 198, 229, 258, 431
CviAII CATG 1 cut(s) 56
CviJI RGCY 8 cut(s) 11, 24, 45, 212, 288, 338, 376, 452
CviKI_1 RGCY 8 cut(s) 11, 24, 45, 212, 288, 338, 376, 452
CviQI GTAC 5 cut(s) 160, 198, 229, 258, 431
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
EaeI YGGCCR 1 cut(s) 210
EciI GGCGGA 1 cut(s) 338
Eco31I GGTCTC 1 cut(s) 319
FaeI CATG 1 cut(s) 59
FaiI YATR 4 cut(s) 14, 57, 148, 209
FaqI GGGAC 1 cut(s) 398
FatI CATG 1 cut(s) 55
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 2 cut(s) 46, 336
FokI GGATG 1 cut(s) 79
Fsp4HI GCNGC 2 cut(s) 46, 336
FspBI CTAG 1 cut(s) 105
GluI GCNGC 2 cut(s) 46, 336
GsuI CTGGAG 1 cut(s) 119
HaeIII GGCC 2 cut(s) 45, 212
HapII CCGG 4 cut(s) 306, 318, 377, 457
Hin1II CATG 1 cut(s) 59
HinfI GANTC 2 cut(s) 52, 215
HpaII CCGG 4 cut(s) 306, 318, 377, 457
HphI GGTGA 2 cut(s) 383, 431
Hpy166II GTNNAC 1 cut(s) 31
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 1 cut(s) 31
Hpy99I CGWCG 2 cut(s) 299, 362
HpyAV CCTTC 3 cut(s) 106, 304, 374
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 2 cut(s) 294, 429
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpySE526I ACGT 2 cut(s) 294, 429
Hsp92II CATG 1 cut(s) 59
KpnI GGTACC 1 cut(s) 261
Kzo9I GATC 1 cut(s) 300
LpnPI CCDG 5 cut(s) 149, 275, 319, 331, 390
Lsp1109I GCAGC 1 cut(s) 347
MaeI CTAG 1 cut(s) 105
MaeII ACGT 2 cut(s) 294, 429
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 2 cut(s) 267, 419
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 3 cut(s) 36, 175, 221
MlyI GAGTC 1 cut(s) 209
MnlI CCTC 2 cut(s) 346, 394
MseI TTAA 2 cut(s) 35, 466
MspI CCGG 4 cut(s) 306, 318, 377, 457
MspR9I CCNGG 3 cut(s) 307, 319, 458
MwoI GCNNNNNNNGC 1 cut(s) 344
NciI CCSGG 3 cut(s) 307, 319, 458
NdeII GATC 1 cut(s) 300
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 259
PfeI GAWTC 1 cut(s) 52
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 2 cut(s) 47, 337
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 43
RsaI GTAC 5 cut(s) 161, 199, 230, 259, 432
RsaNI GTAC 5 cut(s) 160, 198, 229, 258, 431
SaqAI TTAA 2 cut(s) 35, 466
SatI GCNGC 2 cut(s) 46, 336
Sau3AI GATC 1 cut(s) 300
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 3 cut(s) 307, 319, 458
SduI GDGCHC 1 cut(s) 112
SetI ASST 8 cut(s) 13, 290, 297, 315, 357, 373, 432, 454
Sse9I AATT 3 cut(s) 36, 175, 221
SsiI CCGC 2 cut(s) 46, 323
SspMI CTAG 1 cut(s) 105
StyD4I CCNGG 3 cut(s) 305, 317, 456
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 2 cut(s) 297, 432
TasI AATT 3 cut(s) 36, 175, 221
TauI GCSGC 1 cut(s) 48
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 2 cut(s) 35, 466
Tru9I TTAA 2 cut(s) 35, 466
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 44
Van91I CCANNNNNTGG 1 cut(s) 208
XapI RAATTY 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.