Rmu_sc0038132.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038132.1
OG0022764
Physical Location & Seq
Reverse (-)
883 .. 1259
377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038132.1_g000001.1.cds

Sequence Viewer

Length: 377 bp
cggaaccccgaagccgccgccgacgaccaagatgccgccatggaaatcgacgccacctacccacctccggcgaagcgatctttggtgtccttctcgaacaatccggacaaaccagtcgtaatcgccgggaaggtctccgagcgaaagtggaagcagccgaggaagcagaggtcgtcggtggttcaggtgagtcggaaggggacgatgttcgaggagagggagaagaacaagtcggtgaagaagacgtacagagaatggcgaagctgaagggggagattaagaagaacaaggaggagaagaggaggaagagggaggaaagggagaagaagaaggagaatattcttccggaggagatgatcaagaggaacaataagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.34

Weight (kDa)

9.66

Isoelectric Point (pI)

92.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022764)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0011701
rosa_multiflora Rmu_sc0000675.1_g000032 Rmu_sc0038132.1_g000001
rosa_roxburghii Rroxscaffold_7G00188920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AccIII TCCGGA 2 cut(s) 103, 345
AciI CCGC 3 cut(s) 15, 18, 36
AcuI CTGAAG 1 cut(s) 286
AcyI GRCGYC 1 cut(s) 51
AfaI GTAC 1 cut(s) 248
AfiI CCNNNNNNNGG 1 cut(s) 67
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 1 cut(s) 264
AluI AGCT 1 cut(s) 264
Alw26I GTCTC 1 cut(s) 139
Aor13HI TCCGGA 2 cut(s) 103, 345
ApeKI GCWGC 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 2 cut(s) 199, 247
BarI GAAGNNNNNNTAC 2 cut(s) 230, 262
BbsI GAAGAC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 166
BcgI CGANNNNNNTGC 2 cut(s) 14, 48
BclI TGATCA 1 cut(s) 356
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 1 cut(s) 139
BisI GCNGC 4 cut(s) 15, 18, 36, 155
BlsI GCNGC 4 cut(s) 16, 19, 37, 156
Bme1390I CCNGG 1 cut(s) 127
BmiI GGNNCC 1 cut(s) 5
BmrFI CCNGG 1 cut(s) 127
BmsI GCATC 1 cut(s) 22
BpiI GAAGAC 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 39, 158
BsaWI WCCGGW 2 cut(s) 103, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 113
BseAI TCCGGA 2 cut(s) 103, 345
BseDI CCNNGG 2 cut(s) 39, 158
BseLI CCNNNNNNNGG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 4 cut(s) 227, 307, 315, 364
BseXI GCAGC 1 cut(s) 166
BsiSI CCGG 4 cut(s) 68, 104, 126, 346
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 214
Bso31I GGTCTC 1 cut(s) 139
Bsp13I TCCGGA 2 cut(s) 103, 345
Bsp143I GATC 2 cut(s) 77, 356
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 3 cut(s) 15, 18, 36
BspEI TCCGGA 2 cut(s) 103, 345
BspLI GGNNCC 1 cut(s) 5
BspTNI GGTCTC 1 cut(s) 139
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 39, 158
BssMI GATC 2 cut(s) 77, 356
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 39
Bst6I CTCTTC 2 cut(s) 292, 301
BstACI GRCGYC 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 39
BstKTI GATC 2 cut(s) 80, 359
BstMAI GTCTC 1 cut(s) 139
BstMBI GATC 2 cut(s) 77, 356
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstSCI CCNGG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 248
BtgI CCRYGG 1 cut(s) 39
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 247
CviAII CATG 1 cut(s) 40
CviJI RGCY 3 cut(s) 14, 157, 264
CviKI_1 RGCY 3 cut(s) 14, 157, 264
CviQI GTAC 1 cut(s) 247
DpnI GATC 2 cut(s) 79, 358
DpnII GATC 2 cut(s) 77, 356
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 292, 301
EarI CTCTTC 2 cut(s) 292, 301
Eco130I CCWWGG 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 1 cut(s) 43
FaiI YATR 1 cut(s) 41
FaqI GGGAC 1 cut(s) 214
FatI CATG 1 cut(s) 39
FbaI TGATCA 1 cut(s) 356
Fnu4HI GCNGC 4 cut(s) 15, 18, 36, 155
Fsp4HI GCNGC 4 cut(s) 15, 18, 36, 155
GluI GCNGC 4 cut(s) 15, 18, 36, 155
HapII CCGG 4 cut(s) 68, 104, 126, 346
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 1 cut(s) 43
HinfI GANTC 1 cut(s) 190
HpaII CCGG 4 cut(s) 68, 104, 126, 346
HphI GGTGA 2 cut(s) 199, 247
Hpy188I TCNGA 2 cut(s) 139, 195
Hpy188III TCNNGA 4 cut(s) 94, 104, 346, 360
Hpy99I CGWCG 3 cut(s) 26, 53, 178
HpyAV CCTTC 5 cut(s) 100, 124, 190, 261, 324
HpyCH4IV ACGT 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
HpySE526I ACGT 1 cut(s) 245
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 1 cut(s) 43
Kpn2I TCCGGA 2 cut(s) 103, 345
Ksp22I TGATCA 1 cut(s) 356
Kzo9I GATC 2 cut(s) 77, 356
LpnPI CCDG 6 cut(s) 81, 117, 126, 139, 170, 359
Lsp1109I GCAGC 1 cut(s) 166
LweI GCATC 1 cut(s) 22
MaeII ACGT 1 cut(s) 245
MalI GATC 2 cut(s) 79, 358
MboI GATC 2 cut(s) 77, 356
MboII GAAGA 9 cut(s) 235, 250, 253, 294, 309, 318, 334, 336, 339
MlyI GAGTC 1 cut(s) 199
MmeI TCCRAC 1 cut(s) 173
MroI TCCGGA 2 cut(s) 103, 345
MseI TTAA 1 cut(s) 278
MspI CCGG 4 cut(s) 68, 104, 126, 346
MspR9I CCNGG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 163
NciI CCSGG 1 cut(s) 127
NcoI CCATGG 1 cut(s) 39
NdeII GATC 2 cut(s) 77, 356
NlaIII CATG 1 cut(s) 43
NlaIV GGNNCC 1 cut(s) 5
NmeAIII GCCGAG 1 cut(s) 183
PkrI GCNGC 4 cut(s) 16, 19, 37, 156
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 5
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 4 cut(s) 15, 18, 36, 155
Sau3AI GATC 2 cut(s) 77, 356
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 127
SetI ASST 7 cut(s) 59, 67, 135, 173, 189, 248, 266
SfaNI GCATC 1 cut(s) 22
SsiI CCGC 3 cut(s) 15, 18, 36
SspI AATATT 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 125
StyI CCWWGG 1 cut(s) 39
TaiI ACGT 1 cut(s) 248
TaqI TCGA 3 cut(s) 48, 95, 210
TauI GCSGC 3 cut(s) 17, 20, 38
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TseI GCWGC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.