RchiOBHm_Chr5g0030491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0019933
Physical Location & Seq
Forward (+)
24136486 .. 24140360
3875 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30982

Sequence Viewer

Length: 690 bp
ATGTCGAATAAAAAGCCTATCCTCCCGCAATTGCAGTGGATTAACATGCATTGCTTCCGATATGGAGAACCTGATCTTGCTGTCTCTCTTCTCTATGCTCTTTTACTTCGAAAACCTAGACCAGATCACCCCACCATGATGCCCAAATCGAAAACCCTCACCACGGTTCTCTGTCTTCCTCTTCGCCTTCTATCCCATTCTCTCAACACACCCACCCTCCCCCCGGTCACCACAAACCCTTATCTAAAACCATATACCCAAACACCACTCTATCATCTTATTCTTGCTGCTCTGAAAAGGTTTGGTTTTGTCTGCAATTTGGGTGTATATTTGCAGTGGCTGATGGAATTACTTGAGCTTTTACTTTTGATATTGAATCTCTGTTTAGTATTGTGTCCCACATGTGGTATTCTAGTGATAAATTGCGTGGTTGGAATCTTGTTTGGGCTGCAGGAGTTTGGATTTTGGTACACTTGGTTTACTGTGTGTGCATTTATTTGCAGGTGTGAAAAGATTTACTTGTCTTTGGACATTAAATTCTCAGTTGAATTCTCAGCATGCTCTATACTGCTTCCGATTAAGCAGCTGAACATAACAAACCATTTAAAGCTGAGGTATAAAAACCCAGGATTCAACTATACTGTAAGATCACGACTGCCATGTTTGAGTTCTTGGAAAAATCCAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

26.36

Weight (kDa)

9.31

Isoelectric Point (pI)

41.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019933)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0030231 RchiOBHm_Chr5g0030491
rosa_roxburghii Rroxscaffold_2G00148270
rosa_samantha Rh1AG367400 Rh3BG288500 Rh7BG402700 Rh7CG514900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 492
Acc36I ACCTGC 1 cut(s) 492
AciI CCGC 1 cut(s) 26
AcsI RAATTY 2 cut(s) 536, 548
AfaI GTAC 1 cut(s) 470
AfiI CCNNNNNNNGG 3 cut(s) 163, 223, 404
AflIII ACRYGT 1 cut(s) 401
AgsI TTSAA 3 cut(s) 376, 548, 634
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 3 cut(s) 358, 586, 610
AluI AGCT 3 cut(s) 358, 586, 610
Alw26I GTCTC 1 cut(s) 88
AlwNI CAGNNNCTG 1 cut(s) 340
ApeKI GCWGC 3 cut(s) 287, 448, 583
ApoI RAATTY 2 cut(s) 536, 548
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 3 cut(s) 119, 151, 220
AsuII TTCGAA 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 167
BbvCI CCTCAGC 1 cut(s) 611
BbvI GCAGC 3 cut(s) 274, 435, 595
BccI CCATC 1 cut(s) 337
BciT130I CCWGG 1 cut(s) 627
BcnI CCSGG 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 88
BfaI CTAG 2 cut(s) 117, 413
BfmI CTRYAG 1 cut(s) 449
BfuAI ACCTGC 1 cut(s) 492
BisI GCNGC 3 cut(s) 288, 449, 584
BlsI GCNGC 3 cut(s) 289, 450, 585
Bme1390I CCNGG 2 cut(s) 224, 627
BmrFI CCNGG 2 cut(s) 224, 627
BmsI GCATC 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 167
Bpu10I CCTNAGC 1 cut(s) 611
Bpu14I TTCGAA 1 cut(s) 109
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 224
BsaJI CCNNGG 3 cut(s) 162, 222, 625
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 223, 404
Bse1I ACTGG 1 cut(s) 683
Bse3DI GCAATG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 3 cut(s) 162, 222, 625
BseLI CCNNNNNNNGG 3 cut(s) 163, 223, 404
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 3 cut(s) 555, 567, 602
BseNI ACTGG 1 cut(s) 683
BseXI GCAGC 3 cut(s) 274, 435, 595
BsiSI CCGG 1 cut(s) 224
BslFI GGGAC 1 cut(s) 381
BslI CCNNNNNNNGG 3 cut(s) 163, 223, 404
BsmAI GTCTC 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 381
Bsp119I TTCGAA 1 cut(s) 109
Bsp143I GATC 3 cut(s) 73, 124, 647
BspACI CCGC 1 cut(s) 26
BspCNI CTCAG 3 cut(s) 554, 566, 603
BspMAI CTGCAG 1 cut(s) 453
BspMI ACCTGC 1 cut(s) 492
BspT104I TTCGAA 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 49
BsrI ACTGG 1 cut(s) 683
BssECI CCNNGG 3 cut(s) 162, 222, 625
BssMI GATC 3 cut(s) 73, 124, 647
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 3 cut(s) 166, 484, 643
Bst6I CTCTTC 2 cut(s) 93, 186
BstBI TTCGAA 1 cut(s) 109
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 3 cut(s) 541, 553, 611
BstDSI CCRYGG 1 cut(s) 162
BstEII GGTNACC 1 cut(s) 226
BstKTI GATC 3 cut(s) 76, 127, 650
BstMAI GTCTC 1 cut(s) 88
BstMBI GATC 3 cut(s) 73, 124, 647
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 3 cut(s) 49, 405, 561
BstPI GGTNACC 1 cut(s) 226
BstSCI CCNGG 2 cut(s) 222, 625
BstSFI CTRYAG 1 cut(s) 449
BstV1I GCAGC 3 cut(s) 274, 435, 595
BstV2I GAAGAC 1 cut(s) 167
BtgI CCRYGG 1 cut(s) 162
BtsI GCAGTG 2 cut(s) 41, 341
BtsIMutI CAGTG 2 cut(s) 41, 341
BveI ACCTGC 1 cut(s) 492
Cac8I GCNNGC 1 cut(s) 559
CaiI CAGNNNCTG 1 cut(s) 340
Csp6I GTAC 1 cut(s) 469
CspCI CAANNNNNGTGG 2 cut(s) 17, 52
CviAII CATG 5 cut(s) 46, 136, 402, 558, 660
CviJI RGCY 6 cut(s) 16, 340, 358, 448, 586, 610
CviKI_1 RGCY 6 cut(s) 16, 340, 358, 448, 586, 610
CviQI GTAC 1 cut(s) 469
DdeI CTNAG 3 cut(s) 541, 553, 611
DpnI GATC 3 cut(s) 75, 126, 649
DpnII GATC 3 cut(s) 73, 124, 647
DraI TTTAAA 1 cut(s) 606
Eam1104I CTCTTC 2 cut(s) 93, 186
EarI CTCTTC 2 cut(s) 93, 186
Eco91I GGTNACC 1 cut(s) 226
EcoO65I GGTNACC 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 625
EcoT22I ATGCAT 1 cut(s) 51
FaeI CATG 5 cut(s) 49, 139, 405, 561, 663
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FaqI GGGAC 1 cut(s) 381
FatI CATG 5 cut(s) 45, 135, 401, 557, 659
FauI CCCGC 1 cut(s) 33
Fnu4HI GCNGC 3 cut(s) 288, 449, 584
Fsp4HI GCNGC 3 cut(s) 288, 449, 584
FspBI CTAG 2 cut(s) 117, 413
GluI GCNGC 3 cut(s) 288, 449, 584
HapII CCGG 1 cut(s) 224
Hin1II CATG 5 cut(s) 49, 139, 405, 561, 663
HinfI GANTC 3 cut(s) 376, 435, 630
HpaII CCGG 1 cut(s) 224
HphI GGTGA 3 cut(s) 119, 151, 220
Hpy166II GTNNAC 2 cut(s) 471, 480
Hpy188I TCNGA 3 cut(s) 59, 294, 576
Hpy188III TCNNGA 1 cut(s) 651
Hpy8I GTNNAC 2 cut(s) 471, 480
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 3 cut(s) 166, 484, 643
HpyCH4V TGCA 7 cut(s) 34, 49, 315, 334, 451, 491, 501
HpyF3I CTNAG 3 cut(s) 541, 553, 611
Hsp92II CATG 5 cut(s) 49, 139, 405, 561, 663
Kzo9I GATC 3 cut(s) 73, 124, 647
LpnPI CCDG 7 cut(s) 84, 135, 237, 437, 487, 612, 639
Lsp1109I GCAGC 3 cut(s) 274, 435, 595
LweI GCATC 1 cut(s) 129
MaeI CTAG 2 cut(s) 117, 413
MaeIII GTNAC 1 cut(s) 226
MalI GATC 3 cut(s) 75, 126, 649
MboI GATC 3 cut(s) 73, 124, 647
MboII GAAGA 3 cut(s) 80, 167, 173
MfeI CAATTG 1 cut(s) 29
MluCI AATT 6 cut(s) 29, 316, 347, 421, 536, 548
MmeI TCCRAC 1 cut(s) 412
MnlI CCTC 5 cut(s) 32, 167, 189, 227, 606
Mph1103I ATGCAT 1 cut(s) 51
MseI TTAA 4 cut(s) 42, 534, 579, 605
MslI CAYNNNNRTG 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 586
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 2 cut(s) 224, 627
MunI CAATTG 1 cut(s) 29
MvaI CCWGG 1 cut(s) 627
NciI CCSGG 1 cut(s) 224
NdeII GATC 3 cut(s) 73, 124, 647
NlaIII CATG 5 cut(s) 49, 139, 405, 561, 663
NmuCI GTSAC 1 cut(s) 226
NsiI ATGCAT 1 cut(s) 51
NspI RCATGY 3 cut(s) 49, 405, 561
NspV TTCGAA 1 cut(s) 109
PaeI GCATGC 1 cut(s) 561
PaqCI CACCTGC 1 cut(s) 492
PciI ACATGT 1 cut(s) 401
PfeI GAWTC 3 cut(s) 376, 435, 630
PkrI GCNGC 3 cut(s) 289, 450, 585
PscI ACATGT 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 625
PspEI GGTNACC 1 cut(s) 226
PspGI CCWGG 1 cut(s) 625
PstI CTGCAG 1 cut(s) 453
PstNI CAGNNNCTG 1 cut(s) 340
PvuII CAGCTG 1 cut(s) 586
RsaI GTAC 1 cut(s) 470
RsaNI GTAC 1 cut(s) 469
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 4 cut(s) 42, 534, 579, 605
SatI GCNGC 3 cut(s) 288, 449, 584
Sau3AI GATC 3 cut(s) 73, 124, 647
ScrFI CCNGG 2 cut(s) 224, 627
SetI ASST 8 cut(s) 73, 118, 302, 360, 506, 588, 612, 617
SfaNI GCATC 1 cut(s) 129
SfcI CTRYAG 1 cut(s) 449
SfuI TTCGAA 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
SphI GCATGC 1 cut(s) 561
Sse9I AATT 6 cut(s) 29, 316, 347, 421, 536, 548
SsiI CCGC 1 cut(s) 26
SspMI CTAG 2 cut(s) 117, 413
StyD4I CCNGG 2 cut(s) 222, 625
TaaI ACNGT 3 cut(s) 166, 484, 643
TaqI TCGA 3 cut(s) 5, 109, 149
TasI AATT 6 cut(s) 29, 316, 347, 421, 536, 548
TfiI GAWTC 3 cut(s) 376, 435, 630
Tru1I TTAA 4 cut(s) 42, 534, 579, 605
Tru9I TTAA 4 cut(s) 42, 534, 579, 605
TscAI CASTG 2 cut(s) 41, 341
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 3 cut(s) 287, 448, 583
Tsp45I GTSAC 1 cut(s) 226
TspRI CASTG 2 cut(s) 41, 341
XapI RAATTY 2 cut(s) 536, 548
XceI RCATGY 3 cut(s) 49, 405, 561
XspI CTAG 2 cut(s) 117, 413
Zsp2I ATGCAT 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.