Rh7CG514900

GEM-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0019933
Physical Location & Seq
Forward (+)
69463733 .. 69467986
4254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG514900.1

Sequence Viewer

Length: 480 bp
ATGCATCGCTTCAGATATGGAGAACCTGATCTGGCTGCCTCTCTTCTCTATGCTCTTTTACTTCGAAAACCTAGACCAGATCACCCCACCATGAAACCCAAAACGAAAACCTTCACCACGGTTCTCTGTCTTCCTCTTCGCCTTCTATGCCATTCTCTCACTCCCCTTCCTGTCACCACGAACCCTTATCTAAAACCATATACCCAAACGCCACTCTGTCATCTTATTCTTGCTGCTCTGAAAAGGAGTTTGGCTTTTGATACAGTTGGTTTATTGTGTGTGCATTTATTCGCTTGCTATCTTTTGACTTCCACCGGACCTGTGGCTGGGACTCTGTTTCTGTCGACGGCAAGAATTGGTTTTTGCAGCGACCGGCCGTTGACTTTTACTGCTCCGTCTGGACAATCAACTTGGAGCTACTACAAGATAACTACTAATTTGACTGATTTTGTGGAATATTGGTTTATGGTATTTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAM

Protein Analysis

159

Amino Acids

17.98

Weight (kDa)

9.24

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019933)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0030231 RchiOBHm_Chr5g0030491
rosa_roxburghii Rroxscaffold_2G00148270
rosa_samantha Rh1AG367400 Rh3BG288500 Rh7BG402700 Rh7CG514900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 344
AcoI YGGCCR 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 1 cut(s) 417
AluI AGCT 1 cut(s) 417
AoxI GGCC 1 cut(s) 374
ApeKI GCWGC 3 cut(s) 35, 233, 366
Asp700I GAANNNNTTC 1 cut(s) 110
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 74, 106, 166
AsuII TTCGAA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 317
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 3 cut(s) 22, 220, 378
BceAI ACGGC 2 cut(s) 361, 363
BfaI CTAG 1 cut(s) 72
BisI GCNGC 3 cut(s) 36, 234, 367
BlsI GCNGC 3 cut(s) 37, 235, 368
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmsI GCATC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 122
Bpu14I TTCGAA 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 117
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse118I RCCGGY 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 326
BseX3I CGGCCG 1 cut(s) 374
BseXI GCAGC 3 cut(s) 22, 220, 378
BseYI CCCAGC 1 cut(s) 326
Bsh1285I CGRYCG 2 cut(s) 373, 377
BshFI GGCC 1 cut(s) 376
BsiEI CGRYCG 2 cut(s) 373, 377
BsiSI CCGG 2 cut(s) 315, 373
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 1 cut(s) 376
Bsp119I TTCGAA 1 cut(s) 64
Bsp143I GATC 2 cut(s) 28, 79
BspANI GGCC 1 cut(s) 376
BspT104I TTCGAA 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 372
BssAI RCCGGY 1 cut(s) 372
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 2 cut(s) 28, 79
Bst4CI ACNGT 2 cut(s) 121, 265
Bst6I CTCTTC 2 cut(s) 48, 141
BstBI TTCGAA 1 cut(s) 64
BstC8I GCNNGC 1 cut(s) 295
BstDSI CCRYGG 1 cut(s) 117
BstKTI GATC 2 cut(s) 31, 82
BstMBI GATC 2 cut(s) 28, 79
BstMCI CGRYCG 2 cut(s) 373, 377
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstV1I GCAGC 3 cut(s) 22, 220, 378
BstV2I GAAGAC 1 cut(s) 122
BstZI CGGCCG 1 cut(s) 374
BsuRI GGCC 1 cut(s) 376
BtgI CCRYGG 1 cut(s) 117
Cac8I GCNNGC 1 cut(s) 295
Cfr10I RCCGGY 1 cut(s) 372
Cfr13I GGNCC 1 cut(s) 317
CviAII CATG 1 cut(s) 91
CviJI RGCY 5 cut(s) 35, 254, 326, 376, 417
CviKI_1 RGCY 5 cut(s) 35, 254, 326, 376, 417
DpnI GATC 2 cut(s) 30, 81
DpnII GATC 2 cut(s) 28, 79
EaeI YGGCCR 1 cut(s) 374
EagI CGGCCG 1 cut(s) 374
Eam1104I CTCTTC 2 cut(s) 48, 141
EarI CTCTTC 2 cut(s) 48, 141
EclXI CGGCCG 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 317
Eco52I CGGCCG 1 cut(s) 374
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 94
FaiI YATR 7 cut(s) 18, 51, 92, 148, 199, 201, 467
FaqI GGGAC 1 cut(s) 343
FatI CATG 1 cut(s) 90
FblI GTMKAC 1 cut(s) 344
Fnu4HI GCNGC 3 cut(s) 36, 234, 367
Fsp4HI GCNGC 3 cut(s) 36, 234, 367
FspBI CTAG 1 cut(s) 72
GluI GCNGC 3 cut(s) 36, 234, 367
GsaI CCCAGC 1 cut(s) 330
HaeIII GGCC 1 cut(s) 376
HapII CCGG 2 cut(s) 315, 373
Hin1II CATG 1 cut(s) 94
HincII GTYRAC 2 cut(s) 345, 381
HindII GTYRAC 2 cut(s) 345, 381
HinfI GANTC 1 cut(s) 331
HpaII CCGG 2 cut(s) 315, 373
HphI GGTGA 3 cut(s) 74, 106, 166
Hpy166II GTNNAC 2 cut(s) 345, 381
Hpy188I TCNGA 2 cut(s) 14, 240
Hpy188III TCNNGA 1 cut(s) 399
Hpy8I GTNNAC 2 cut(s) 345, 381
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 3 cut(s) 121, 152, 176
HpyCH4III ACNGT 2 cut(s) 121, 265
HpyCH4V TGCA 3 cut(s) 4, 283, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 2 cut(s) 28, 79
LmnI GCTCC 2 cut(s) 397, 414
LpnPI CCDG 9 cut(s) 17, 39, 90, 183, 312, 328, 333, 384, 386
Lsp1109I GCAGC 3 cut(s) 22, 220, 378
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 172
MalI GATC 2 cut(s) 30, 81
MboI GATC 2 cut(s) 28, 79
MboII GAAGA 3 cut(s) 35, 122, 128
MluCI AATT 2 cut(s) 354, 436
MlyI GAGTC 1 cut(s) 325
MnlI CCTC 2 cut(s) 49, 144
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 110
MspI CCGG 2 cut(s) 315, 373
MwoI GCNNNNNNNGC 1 cut(s) 147
NdeII GATC 2 cut(s) 28, 79
NlaIII CATG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 172
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 64
PdmI GAANNNNTTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 37, 235, 368
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PspFI CCCAGC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 317
SalI GTCGAC 1 cut(s) 343
SatI GCNGC 3 cut(s) 36, 234, 367
Sau3AI GATC 2 cut(s) 28, 79
Sau96I GGNCC 1 cut(s) 317
SchI GAGTC 1 cut(s) 325
SetI ASST 5 cut(s) 28, 73, 113, 322, 419
SfaNI GCATC 1 cut(s) 13
SfuI TTCGAA 1 cut(s) 64
SinI GGWCC 1 cut(s) 317
Sse9I AATT 2 cut(s) 354, 436
SspI AATATT 1 cut(s) 458
SspMI CTAG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 121, 265
TaqI TCGA 2 cut(s) 64, 344
TasI AATT 2 cut(s) 354, 436
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 3 cut(s) 35, 233, 366
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 107
TspGWI ACGGA 1 cut(s) 384
VpaK11BI GGWCC 1 cut(s) 317
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 110
XspI CTAG 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.