Rh1AG367400

GEM-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0019933
Physical Location & Seq
Forward (+)
60190596 .. 60191433
838 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG367400.1

Sequence Viewer

Length: 522 bp
ATGAAACCCAAAACAAAAACCTTCACCACGGTTCTCTGTCTTCCTCTTTGCCTTCTATACCATTCTCTCACTCCCCTTCCTGTCACCACGAACCCTTATCTAAAACCATATACCCAAACGCCACTCTGTCATCTTATTCTTGCTGCTCTGAAAAGGGACCGGCCGTTGACTTTTACTGCTCCGTCTGGACAATCAACTTGGAGCTACTACAAGGTAACTACTAATTTGACTGATTTTGTGGATATTGGTTTCTGGTATTTGAGTAAATTGATTGAAAATATCTGTGTTGATGAACAAGTGATGATACCTATGACGAATGTAGGGACAGTGAATCCTGTGGTGATTACGGAGACCCCGACGCTGGAGAAGTACCTTCAGATTGTCACCACCGATGAACATGATTTCTGGTTTATGGGGTTTGTTAACTTCGAGAAAGCTTCGCATCACATACTAGACAGTGTGTCGAATTTTAGAGCAGTTAGGACCAATGAAGTGCAACAAGTGCAACCTGTTGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAM

Protein Analysis

173

Amino Acids

19.74

Weight (kDa)

6.5

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019933)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0030231 RchiOBHm_Chr5g0030491
rosa_roxburghii Rroxscaffold_2G00148270
rosa_samantha Rh1AG367400 Rh3BG288500 Rh7BG402700 Rh7CG514900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 161
AcsI RAATTY 1 cut(s) 466
AcuI CTGAAG 1 cut(s) 359
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 1 cut(s) 361
AgsI TTSAA 1 cut(s) 275
AhdI GACNNNNNGTC 1 cut(s) 460
AluBI AGCT 2 cut(s) 204, 437
AluI AGCT 2 cut(s) 204, 437
Alw26I GTCTC 1 cut(s) 344
AoxI GGCC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 466
AspS9I GGNCC 2 cut(s) 157, 483
AsuHPI GGTGA 4 cut(s) 16, 76, 352, 376
AvaII GGWCC 2 cut(s) 157, 483
BbsI GAAGAC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 130
BceAI ACGGC 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 1 cut(s) 452
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme18I GGWCC 2 cut(s) 157, 483
BmeRI GACNNNNNGTC 1 cut(s) 460
BmgT120I GGNCC 2 cut(s) 157, 483
BmiI GGNNCC 1 cut(s) 158
BmsI GCATC 1 cut(s) 451
BpiI GAAGAC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 383
BsaI GGTCTC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 361
Bse118I RCCGGY 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 27
BseLI CCNNNNNNNGG 1 cut(s) 361
BseX3I CGGCCG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 164
BshFI GGCC 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 164
BsiSI CCGG 1 cut(s) 160
BslFI GGGAC 2 cut(s) 170, 337
BslI CCNNNNNNNGG 1 cut(s) 361
BsmAI GTCTC 1 cut(s) 344
BsmFI GGGAC 2 cut(s) 170, 337
BsnI GGCC 1 cut(s) 163
Bso31I GGTCTC 1 cut(s) 344
BspANI GGCC 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 27
Bst4CI ACNGT 3 cut(s) 31, 328, 458
BstAPI GCANNNNNTGC 1 cut(s) 502
BstDEI CTNAG 1 cut(s) 519
BstDSI CCRYGG 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 344
BstMCI CGRYCG 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 502
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 32
BstZI CGGCCG 1 cut(s) 161
BsuRI GGCC 1 cut(s) 163
BtgI CCRYGG 1 cut(s) 27
BtsIMutI CAGTG 2 cut(s) 333, 463
Cfr10I RCCGGY 1 cut(s) 159
Cfr13I GGNCC 2 cut(s) 157, 483
CseI GACGC 1 cut(s) 367
Csp6I GTAC 1 cut(s) 370
CviAII CATG 1 cut(s) 398
CviJI RGCY 3 cut(s) 163, 204, 437
CviKI_1 RGCY 3 cut(s) 163, 204, 437
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 1 cut(s) 519
DriI GACNNNNNGTC 1 cut(s) 460
EaeI YGGCCR 1 cut(s) 161
EagI CGGCCG 1 cut(s) 161
Eam1105I GACNNNNNGTC 1 cut(s) 460
EclXI CGGCCG 1 cut(s) 161
Eco31I GGTCTC 1 cut(s) 344
Eco47I GGWCC 2 cut(s) 157, 483
Eco52I CGGCCG 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 359
FaeI CATG 1 cut(s) 401
FaiI YATR 7 cut(s) 58, 109, 111, 311, 399, 413, 449
FaqI GGGAC 2 cut(s) 170, 337
FatI CATG 1 cut(s) 397
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 452
GluI GCNGC 1 cut(s) 144
GsuI CTGGAG 1 cut(s) 383
HaeIII GGCC 1 cut(s) 163
HapII CCGG 1 cut(s) 160
HgaI GACGC 1 cut(s) 367
Hin1II CATG 1 cut(s) 401
HincII GTYRAC 2 cut(s) 168, 424
HindII GTYRAC 2 cut(s) 168, 424
HindIII AAGCTT 1 cut(s) 435
HinfI GANTC 1 cut(s) 331
HpaI GTTAAC 1 cut(s) 424
HpaII CCGG 1 cut(s) 160
HphI GGTGA 4 cut(s) 16, 76, 352, 376
Hpy166II GTNNAC 2 cut(s) 168, 424
Hpy188I TCNGA 2 cut(s) 150, 378
Hpy188III TCNNGA 2 cut(s) 186, 430
Hpy8I GTNNAC 2 cut(s) 168, 424
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 4 cut(s) 31, 62, 86, 383
HpyCH4III ACNGT 3 cut(s) 31, 328, 458
HpyCH4V TGCA 2 cut(s) 496, 505
HpyF10VI GCNNNNNNNGC 1 cut(s) 502
HpyF3I CTNAG 1 cut(s) 519
Hsp92II CATG 1 cut(s) 401
KspAI GTTAAC 1 cut(s) 424
LmnI GCTCC 2 cut(s) 184, 201
LpnPI CCDG 7 cut(s) 93, 171, 173, 238, 347, 348, 391
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 451
MaeI CTAG 1 cut(s) 452
MaeIII GTNAC 3 cut(s) 82, 214, 382
MboII GAAGA 1 cut(s) 32
MluCI AATT 3 cut(s) 223, 266, 466
MnlI CCTC 1 cut(s) 54
MseI TTAA 1 cut(s) 423
MspI CCGG 1 cut(s) 160
MwoI GCNNNNNNNGC 1 cut(s) 502
NlaIII CATG 1 cut(s) 401
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 2 cut(s) 82, 382
PcsI WCGNNNNNNNCGW 1 cut(s) 353
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 2 cut(s) 157, 483
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 1 cut(s) 144
Sau96I GGNCC 2 cut(s) 157, 483
SetI ASST 7 cut(s) 23, 206, 216, 310, 375, 439, 511
SfaNI GCATC 1 cut(s) 451
SinI GGWCC 2 cut(s) 157, 483
Sse9I AATT 3 cut(s) 223, 266, 466
SspMI CTAG 1 cut(s) 452
TaaI ACNGT 3 cut(s) 31, 328, 458
TaqI TCGA 2 cut(s) 429, 464
TasI AATT 3 cut(s) 223, 266, 466
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 2 cut(s) 333, 463
TseFI GTSAC 2 cut(s) 82, 382
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 2 cut(s) 82, 382
TspDTI ATGAA 4 cut(s) 17, 306, 408, 504
TspGWI ACGGA 2 cut(s) 171, 362
TspRI CASTG 2 cut(s) 333, 463
VpaK11BI GGWCC 2 cut(s) 157, 483
XapI RAATTY 1 cut(s) 466
XspI CTAG 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.