RchiOBHm_Chr5g0038921

glutamate carboxypeptidase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
33667491 .. 33669555
2065 bp
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UTR
Exon/CDS
Intron
PRQ31751

Sequence Viewer

Length: 297 bp
ATGTCGACAGTGCAGTATATGCGCCAGGATTCTGGGCCTCTGCCACTCCACAGCTTGATAAACTTCTTAAGCAAGCTACTCAACAGGTCAAAGATCTCAATAACTCATCACAAACTCTCTACCAAGCGTGGGTTGGTTCCAGCAGTTCACCTAGAGTTGGGAAGTGGAGAATCTGATTTTGCAGCTTTTGTTCAAAATAATGGAATTCCGTCTGCCGACATGACTTTCTGTAAAGGATATCCAGTATACCATGCCATTCCATGTATGATGACTTTGTATGGTTGGAAAATTTGGTGA

Protein Analysis

98

Amino Acids

10.99

Weight (kDa)

9.3

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022531)

Species Orthologous Gene IDs
pyrus_communis pycom02g05320
rosa_chinensis RchiOBHm_Chr5g0038921
rosa_rugosa Rorug05G0175200
rosa_samantha Rh5BG266600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 5, 246
AcsI RAATTY 2 cut(s) 204, 288
AfiI CCNNNNNNNGG 2 cut(s) 129, 157
AflII CTTAAG 1 cut(s) 67
AgsI TTSAA 1 cut(s) 194
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 3 cut(s) 54, 76, 185
AluI AGCT 3 cut(s) 54, 76, 185
AoxI GGCC 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 2 cut(s) 204, 288
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 35
AsuHPI GGTGA 1 cut(s) 140
BbvI GCAGC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 26
BfaI CTAG 1 cut(s) 152
BfrI CTTAAG 1 cut(s) 67
BglII AGATCT 1 cut(s) 93
BisI GCNGC 1 cut(s) 183
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 26
BmgT120I GGNCC 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 138
BmrFI CCNGG 1 cut(s) 26
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 157
Bse1I ACTGG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 129, 157
BseNI ACTGG 1 cut(s) 242
BseXI GCAGC 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 32
BshFI GGCC 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 129, 157
BsnI GGCC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 93
BspANI GGCC 1 cut(s) 37
BspLI GGNNCC 1 cut(s) 138
BspTI CTTAAG 1 cut(s) 67
BsrI ACTGG 1 cut(s) 242
BssMI GATC 1 cut(s) 93
BssNAI GTATAC 1 cut(s) 247
Bst1107I GTATAC 1 cut(s) 247
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 10
BstAFI CTTAAG 1 cut(s) 67
BstAPI GCANNNNNTGC 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 74
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstV1I GCAGC 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 93
BstXI CCANNNNNNTGG 1 cut(s) 32
BstYI RGATCY 1 cut(s) 93
BstZ17I GTATAC 1 cut(s) 247
BsuRI GGCC 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 35
CviAII CATG 3 cut(s) 220, 251, 261
CviJI RGCY 4 cut(s) 37, 54, 76, 185
CviKI_1 RGCY 4 cut(s) 37, 54, 76, 185
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eco32I GATATC 1 cut(s) 239
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 24
EcoRV GATATC 1 cut(s) 239
FaeI CATG 3 cut(s) 223, 254, 264
FaiI YATR 8 cut(s) 18, 20, 221, 247, 252, 262, 266, 279
FatI CATG 3 cut(s) 219, 250, 260
FblI GTMKAC 2 cut(s) 5, 246
Fnu4HI GCNGC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 183
FspBI CTAG 1 cut(s) 152
GlaI GCGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 183
HaeIII GGCC 1 cut(s) 37
HhaI GCGC 1 cut(s) 24
Hin1II CATG 3 cut(s) 223, 254, 264
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 29, 170
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 3 cut(s) 6, 148, 247
Hpy188I TCNGA 1 cut(s) 175
Hpy8I GTNNAC 3 cut(s) 6, 148, 247
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4V TGCA 2 cut(s) 13, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
Hsp92II CATG 3 cut(s) 223, 254, 264
HspAI GCGC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 93
LpnPI CCDG 6 cut(s) 11, 18, 38, 70, 153, 255
Lsp1109I GCAGC 1 cut(s) 194
MaeI CTAG 1 cut(s) 152
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MflI RGATCY 1 cut(s) 93
MluCI AATT 2 cut(s) 204, 288
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 1 cut(s) 48
MseI TTAA 1 cut(s) 68
MspCI CTTAAG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 19
NdeII GATC 1 cut(s) 93
NlaIII CATG 3 cut(s) 223, 254, 264
NlaIV GGNNCC 1 cut(s) 138
PfeI GAWTC 2 cut(s) 29, 170
PkrI GCNGC 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 138
PspPI GGNCC 1 cut(s) 35
PsuI RGATCY 1 cut(s) 93
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 183
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 35
ScrFI CCNGG 1 cut(s) 26
SetI ASST 5 cut(s) 56, 78, 89, 153, 187
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 2 cut(s) 204, 288
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 10
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 204, 288
TfiI GAWTC 2 cut(s) 29, 170
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 15
TseI GCWGC 1 cut(s) 182
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 15
Vha464I CTTAAG 1 cut(s) 67
XapI RAATTY 2 cut(s) 204, 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmiI GTMKAC 2 cut(s) 5, 246
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.