Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0022531

Physical Location & Seq

Genomic Coordinates Forward (+)

33300012 .. 33315688

Gene Structure 15677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG266600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTCGAATGCAGAAGATGGTGGAAACAGCAAAACGCCATTTGTTTTTGGGTTTATCATTAATGAGCCTAATGCTGGGATCATCAAGCGTGCTCTCTGCATGCATATGCATGGTTGGAGAATCAGCATGCTTCACTTCAACTGTTTCACCAAAAGCAATAACTGAATATTCTGAGTTTAGCAGGTTGGGAAGCGGAGAATCTGATTTTGCAGCTTTTGTTCAAAATAATGGAATTCCGTCAGCCGACATGACTTTCTGTAAAGGATATCCAGTATACCATGCCATTCCATTGGCTAACTTATGGGGTTTGATAGCTCTTTGGCTAGCAGATGCAGAGTTTTTGCCTTTTGATTATACATCCTATGCGCCGGAGCTACAGAAATACATGAAGGATTTGGAAGTTGAAATCTTAGATAAGAACATTAACCTAACTCCTCTGGTCAAGTCCATTGAGCAGCTCAAAAAACCAGCCACAATAATCAACAACCAAATGAAGGAAATAGAACAAAGAAAAGGTTGCCCTTCAAAATGGAAGAAGGAGTATTATCATTCTTCTTCTGAAGAAAGCCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0008150 GO:0009888 GO:0010073 GO:0012505 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PA Peptidase_M28 TFR_dimer

Protein Analysis

192

Amino Acids

21.56

Weight (kDa)

5.7

Isoelectric Point (pI)

64.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022531)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g05320
rosa_chinensis	RchiOBHm_Chr5g0038921
rosa_rugosa	Rorug05G0175200
rosa_samantha	Rh5BG266600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	234
AfiI	CCNNNNNNNGG	2 cut(s)	76, 496
AgsI	TTSAA	4 cut(s)	141, 224, 407, 528
AluBI	AGCT	4 cut(s)	215, 317, 376, 460
AluI	AGCT	4 cut(s)	215, 317, 376, 460
Alw21I	GWGCWC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	212, 457
ApoI	RAATTY	1 cut(s)	234
AseI	ATTAAT	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	370
AsuHPI	GGTGA	1 cut(s)	141
AsuNHI	GCTAGC	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	224, 469
BccI	CCATC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	174
BisI	GCNGC	2 cut(s)	213, 458
BlsI	GCNGC	2 cut(s)	214, 459
BmsI	GCATC	1 cut(s)	322
BmtI	GCTAGC	1 cut(s)	329
Bsc4I	CCNNNNNNNGG	2 cut(s)	76, 496
Bse1I	ACTGG	1 cut(s)	272
BseGI	GGATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	2 cut(s)	76, 496
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	272
BseRI	GAGGAG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	224, 469
BseYI	CCCAGC	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	76, 496
BsmI	GAATGC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	80
BspACI	CCGC	1 cut(s)	195
BspCNI	CTCAG	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	174
BspOI	GCTAGC	1 cut(s)	329
BspPI	GGATC	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	272
BssMI	GATC	1 cut(s)	80
BssNAI	GTATAC	1 cut(s)	277
Bst1107I	GTATAC	1 cut(s)	277
Bst4CI	ACNGT	1 cut(s)	145
BstC8I	GCNNGC	4 cut(s)	92, 103, 130, 327
BstDEI	CTNAG	2 cut(s)	174, 412
BstF5I	GGATG	1 cut(s)	359
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	1 cut(s)	83
BstMBI	GATC	1 cut(s)	80
BstNSI	RCATGY	2 cut(s)	105, 132
BstSFI	CTRYAG	1 cut(s)	377
BstV1I	GCAGC	2 cut(s)	224, 469
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstZ17I	GTATAC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	359
BveI	ACCTGC	1 cut(s)	174
Cac8I	GCNNGC	4 cut(s)	92, 103, 130, 327
CfoI	GCGC	1 cut(s)	370
CviAII	CATG	6 cut(s)	102, 112, 129, 250, 281, 388
DdeI	CTNAG	2 cut(s)	174, 412
DpnI	GATC	1 cut(s)	82
DpnII	GATC	1 cut(s)	80
Eco32I	GATATC	1 cut(s)	269
EcoRI	GAATTC	1 cut(s)	234
EcoRV	GATATC	1 cut(s)	269
EcoT22I	ATGCAT	2 cut(s)	107, 113
FaeI	CATG	6 cut(s)	105, 115, 132, 253, 284, 391
FatI	CATG	6 cut(s)	101, 111, 128, 249, 280, 387
FauNDI	CATATG	1 cut(s)	107
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	213, 458
FokI	GGATG	1 cut(s)	346
Fsp4HI	GCNGC	2 cut(s)	213, 458
FspBI	CTAG	1 cut(s)	326
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	2 cut(s)	213, 458
GsaI	CCCAGC	1 cut(s)	80
HapII	CCGG	1 cut(s)	371
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	6 cut(s)	105, 115, 132, 253, 284, 391
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HinfI	GANTC	2 cut(s)	122, 200
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	1 cut(s)	141
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	3 cut(s)	175, 205, 562
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	4 cut(s)	385, 490, 532, 534
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4V	TGCA	6 cut(s)	13, 101, 105, 111, 212, 335
HpyF3I	CTNAG	2 cut(s)	174, 412
Hsp92II	CATG	6 cut(s)	105, 115, 132, 253, 284, 391
HspAI	GCGC	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	6 cut(s)	62, 169, 285, 384, 425, 483
Lsp1109I	GCAGC	2 cut(s)	224, 469
LweI	GCATC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	326
MalI	GATC	1 cut(s)	82
MboI	GATC	1 cut(s)	80
MboII	GAAGA	5 cut(s)	28, 546, 547, 549, 575
MhlI	GDGCHC	1 cut(s)	96
MluCI	AATT	1 cut(s)	234
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	1 cut(s)	447
Mph1103I	ATGCAT	2 cut(s)	107, 113
MseI	TTAA	2 cut(s)	62, 426
MslI	CAYNNNNRTG	2 cut(s)	106, 110
MspI	CCGG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	15
NdeI	CATATG	1 cut(s)	107
NdeII	GATC	1 cut(s)	80
NheI	GCTAGC	1 cut(s)	325
NlaIII	CATG	6 cut(s)	105, 115, 132, 253, 284, 391
NsiI	ATGCAT	2 cut(s)	107, 113
NspI	RCATGY	2 cut(s)	105, 132
PaeI	GCATGC	2 cut(s)	105, 132
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	122, 200
PkrI	GCNGC	2 cut(s)	214, 459
PshBI	ATTAAT	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	76
RseI	CAYNNNNRTG	2 cut(s)	106, 110
SaqAI	TTAA	2 cut(s)	62, 426
SatI	GCNGC	2 cut(s)	213, 458
Sau3AI	GATC	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	7 cut(s)	188, 217, 319, 378, 432, 462, 520
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	106, 110
SphI	GCATGC	2 cut(s)	105, 132
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	1 cut(s)	195
SspI	AATATT	1 cut(s)	170
SspMI	CTAG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	7
TasI	AATT	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	122, 200
Tru1I	TTAA	2 cut(s)	62, 426
Tru9I	TTAA	2 cut(s)	62, 426
TseI	GCWGC	2 cut(s)	212, 457
TspDTI	ATGAA	2 cut(s)	404, 509
TspGWI	ACGGA	1 cut(s)	228
VspI	ATTAAT	1 cut(s)	62
XapI	RAATTY	1 cut(s)	234
XceI	RCATGY	2 cut(s)	105, 132
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	1 cut(s)	326
Zsp2I	ATGCAT	2 cut(s)	107, 113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.