RchiOBHm_Chr5g0040071

Protein of unknown function (DUF2985)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0025039
Physical Location & Seq
Forward (+)
34800575 .. 34801122
548 bp
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UTR
Exon/CDS
Intron
PRQ31859

Sequence Viewer

Length: 498 bp
ATGTATCGCTGTTCTGTAGCTTTTGTGTATTTGGGTGGTATATGGACAGACTTGGGTTCGGGAACATGTATCTTTAACTTGGTTGCTGTTAATATTGACAATGAGACTATTCGAGAGGCTCTTGCAATTACTAGTATAATTCTTTGTGTTTTTGGTTTGCTCTATGGTGGCTTTTGGAGGATCCAAATGAGAAAGAGATTCAACTTGCCTTCTTATAACTTCTGTTTTGGTGAACCGGCAGTGTCTGATTGCACGTTGTGGCTCTTCTATTGTTGTTCTCCTCTTGCTCAGGAAATGAGAACAGGGAATACCTATAACATTGTAGAAGACCAGTTTTGTAGAAAAGAAACAGATATTCCGAGCCAGCCCCGAATGTCACCCTTGCCACGTGAAGATGGAGTTGGTCAACTTAGGTCTGGTCCAAGTTCTCCTTTGGGGAACTACTCAAGCCAAACTAAGACTGGCATAATTGGTTCTCCAAGTCCTAGTAGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2985 PLAC8

Protein Analysis

165

Amino Acids

18.41

Weight (kDa)

7.47

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLAC8 PF04749 9 - 100 1.9e-07 PLAC8 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025039)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0040071
rosa_laevigata RLG00000011427
rosa_multiflora Rmu_sc0031017.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AclWI GGATC 2 cut(s) 175, 188
AcvI CACGTG 1 cut(s) 389
AdeI CACNNNGTG 1 cut(s) 258
AflIII ACRYGT 1 cut(s) 65
AgsI TTSAA 1 cut(s) 202
AhlI ACTAGT 1 cut(s) 131
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 2 cut(s) 175, 188
AlwNI CAGNNNCTG 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 2 cut(s) 242, 369
AvaII GGWCC 1 cut(s) 419
BamHI GGATCC 1 cut(s) 180
BbrPI CACGTG 1 cut(s) 389
BbsI GAAGAC 1 cut(s) 333
BccI CCATC 1 cut(s) 389
BcoDI GTCTC 1 cut(s) 98
BcuI ACTAGT 1 cut(s) 131
BfaI CTAG 2 cut(s) 132, 486
BfmI CTRYAG 1 cut(s) 15
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 333
Bpu10I CCTNAGC 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 430
BsaAI YACGTR 1 cut(s) 389
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 2 cut(s) 331, 466
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 2 cut(s) 331, 466
BseRI GAGGAG 1 cut(s) 270
BsiSI CCGG 1 cut(s) 236
BsmAI GTCTC 1 cut(s) 98
Bsp143I GATC 1 cut(s) 180
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 182
BspPI GGATC 2 cut(s) 175, 188
BspQI GCTCTTC 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 2 cut(s) 331, 466
BssAI RCCGGY 1 cut(s) 235
BssMI GATC 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 3 cut(s) 288, 410, 456
BstKTI GATC 1 cut(s) 183
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 15
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 365
CaiI CAGNNNCTG 1 cut(s) 245
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 419
CviAII CATG 1 cut(s) 66
CviJI RGCY 7 cut(s) 20, 119, 171, 262, 363, 367, 450
CviKI_1 RGCY 7 cut(s) 20, 119, 171, 262, 363, 367, 450
DdeI CTNAG 3 cut(s) 288, 410, 456
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
DraIII CACNNNGTG 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 419
Eco72I CACGTG 1 cut(s) 389
FaeI CATG 1 cut(s) 69
FaiI YATR 8 cut(s) 41, 43, 67, 137, 165, 216, 315, 467
FalI AAGNNNNNCTT 2 cut(s) 415, 447
FatI CATG 1 cut(s) 65
FspBI CTAG 2 cut(s) 132, 486
HapII CCGG 1 cut(s) 236
Hin1II CATG 1 cut(s) 69
HincII GTYRAC 1 cut(s) 407
HindII GTYRAC 1 cut(s) 407
HinfI GANTC 1 cut(s) 198
HpaII CCGG 1 cut(s) 236
HphI GGTGA 2 cut(s) 242, 369
Hpy166II GTNNAC 2 cut(s) 233, 407
Hpy188I TCNGA 2 cut(s) 247, 360
Hpy188III TCNNGA 3 cut(s) 60, 113, 290
Hpy8I GTNNAC 2 cut(s) 233, 407
HpyAV CCTTC 1 cut(s) 219
HpyCH4IV ACGT 2 cut(s) 254, 388
HpyCH4V TGCA 2 cut(s) 125, 252
HpyF3I CTNAG 3 cut(s) 288, 410, 456
HpySE526I ACGT 2 cut(s) 254, 388
Hsp92II CATG 1 cut(s) 69
Kzo9I GATC 1 cut(s) 180
LguI GCTCTTC 1 cut(s) 269
LpnPI CCDG 7 cut(s) 249, 275, 288, 344, 377, 402, 447
MaeI CTAG 2 cut(s) 132, 486
MaeII ACGT 2 cut(s) 254, 388
MaeIII GTNAC 1 cut(s) 375
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 3 cut(s) 256, 338, 404
MflI RGATCY 1 cut(s) 180
MluCI AATT 3 cut(s) 126, 138, 468
MnlI CCTC 3 cut(s) 109, 171, 291
MseI TTAA 3 cut(s) 75, 90, 496
MspI CCGG 1 cut(s) 236
NdeII GATC 1 cut(s) 180
NlaIII CATG 1 cut(s) 69
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 375
NspI RCATGY 1 cut(s) 69
PciI ACATGT 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 198
PmaCI CACGTG 1 cut(s) 389
PmlI CACGTG 1 cut(s) 389
Ppu21I YACGTR 1 cut(s) 389
PscI ACATGT 1 cut(s) 65
PsiI TTATAA 1 cut(s) 216
PspCI CACGTG 1 cut(s) 389
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 419
PsrI GAACNNNNNNTAC 2 cut(s) 292, 324
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 1 cut(s) 180
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 3 cut(s) 75, 90, 496
Sau3AI GATC 1 cut(s) 180
Sau96I GGNCC 1 cut(s) 419
SetI ASST 5 cut(s) 22, 257, 314, 391, 416
SfcI CTRYAG 1 cut(s) 15
SinI GGWCC 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
SpeI ACTAGT 1 cut(s) 131
Sse9I AATT 3 cut(s) 126, 138, 468
SspI AATATT 1 cut(s) 94
SspMI CTAG 2 cut(s) 132, 486
TaiI ACGT 2 cut(s) 257, 391
TaqI TCGA 1 cut(s) 112
TasI AATT 3 cut(s) 126, 138, 468
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 3 cut(s) 75, 90, 496
Tru9I TTAA 3 cut(s) 75, 90, 496
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 375
Tsp45I GTSAC 1 cut(s) 375
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 419
XceI RCATGY 1 cut(s) 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 458
XspI CTAG 2 cut(s) 132, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.