RLG00000011427

Protein of unknown function (DUF2985)

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
9378416 .. 9379999
1584 bp
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UTR
Exon/CDS
Intron
RLM00000011427

Sequence Viewer

Length: 390 bp
ATGTCACCCTTGCCCCGTGAAAATGGAGTAGGTCAACTTGGGTCTGGTCCAAATACTCCTTTGGGGAACTACTCAAGCCCAACTAAGACCGGCATAATTGGTTCTCCAAGTCCCAACTTATTTTCAAAGGGACTGTATAATCCAAATAGGGCACTTTCTTCAATTAAAGAAGAATCTCATCCAACAGTCTCTCTCAGACTCGAACCCTCTCCGCCTCTCAACCTCTCCTTCAACCCTTTGAAGTTCGAAGTTCGAACTATCCAAGAATCGAACCCAAAGATAAGAGATTCATGTCCTAGTGTCCTACGGCAGTGGAATGGGTCTCTGTTGTTGTTAATCTCAAGTGGAACAGGAGGACTGAGGACTGAGTTTGACTGTTTGACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

13.87

Weight (kDa)

9.14

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025039)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0040071
rosa_laevigata RLG00000011427
rosa_multiflora Rmu_sc0031017.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AgsI TTSAA 4 cut(s) 126, 162, 232, 241
Alw26I GTCTC 2 cut(s) 193, 327
AspS9I GGNCC 1 cut(s) 47
AsuII TTCGAA 2 cut(s) 246, 253
AvaII GGWCC 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 154
BceAI ACGGC 1 cut(s) 323
BcoDI GTCTC 2 cut(s) 193, 327
BfaI CTAG 1 cut(s) 297
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
Bpu14I TTCGAA 2 cut(s) 246, 253
BpuEI CTTGAG 2 cut(s) 58, 325
BsaI GGTCTC 1 cut(s) 327
Bse118I RCCGGY 1 cut(s) 89
BseGI GGATG 1 cut(s) 178
BseMII CTCAG 3 cut(s) 208, 350, 357
BseSI GKGCMC 1 cut(s) 154
BsiSI CCGG 1 cut(s) 90
BslFI GGGAC 2 cut(s) 96, 144
BsmAI GTCTC 2 cut(s) 193, 327
BsmFI GGGAC 2 cut(s) 96, 144
Bso31I GGTCTC 1 cut(s) 327
Bsp119I TTCGAA 2 cut(s) 246, 253
Bsp1286I GDGCHC 1 cut(s) 154
BspACI CCGC 1 cut(s) 212
BspCNI CTCAG 3 cut(s) 207, 351, 358
BspT104I TTCGAA 2 cut(s) 246, 253
BspTNI GGTCTC 1 cut(s) 327
BsrFI RCCGGY 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 89
Bst4CI ACNGT 4 cut(s) 135, 187, 377, 385
BstBI TTCGAA 2 cut(s) 246, 253
BstDEI CTNAG 4 cut(s) 84, 194, 359, 366
BstF5I GGATG 1 cut(s) 178
BstMAI GTCTC 2 cut(s) 193, 327
BstSLI GKGCMC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 178
BtsI GCAGTG 1 cut(s) 317
BtsIMutI CAGTG 1 cut(s) 317
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 1 cut(s) 47
CviAII CATG 1 cut(s) 291
CviJI RGCY 1 cut(s) 78
CviKI_1 RGCY 1 cut(s) 78
DdeI CTNAG 4 cut(s) 84, 194, 359, 366
EciI GGCGGA 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 47
FaeI CATG 1 cut(s) 294
FaiI YATR 3 cut(s) 95, 138, 292
FaqI GGGAC 2 cut(s) 96, 144
FatI CATG 1 cut(s) 290
FokI GGATG 1 cut(s) 165
FspBI CTAG 1 cut(s) 297
HapII CCGG 1 cut(s) 90
Hin1II CATG 1 cut(s) 294
HincII GTYRAC 1 cut(s) 35
HindII GTYRAC 1 cut(s) 35
HinfI GANTC 4 cut(s) 173, 198, 266, 287
HpaII CCGG 1 cut(s) 90
Hpy166II GTNNAC 1 cut(s) 35
Hpy188I TCNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 4 cut(s) 135, 187, 377, 385
HpyF3I CTNAG 4 cut(s) 84, 194, 359, 366
Hsp92II CATG 1 cut(s) 294
LpnPI CCDG 3 cut(s) 30, 103, 336
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 2 cut(s) 150, 182
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 2 cut(s) 96, 162
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 5 cut(s) 217, 225, 233, 347, 354
MseI TTAA 2 cut(s) 165, 335
MspI CCGG 1 cut(s) 90
NlaIII CATG 1 cut(s) 294
NmuCI GTSAC 1 cut(s) 3
NspV TTCGAA 2 cut(s) 246, 253
PfeI GAWTC 3 cut(s) 173, 266, 287
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 165, 335
Sau96I GGNCC 1 cut(s) 47
SchI GAGTC 1 cut(s) 192
SduI GDGCHC 1 cut(s) 154
SetI ASST 2 cut(s) 34, 225
SfuI TTCGAA 2 cut(s) 246, 253
SinI GGWCC 1 cut(s) 47
SmlI CTYRAG 2 cut(s) 73, 340
SmoI CTYRAG 2 cut(s) 73, 340
Sse9I AATT 2 cut(s) 96, 162
SsiI CCGC 1 cut(s) 212
SspMI CTAG 1 cut(s) 297
TaaI ACNGT 4 cut(s) 135, 187, 377, 385
TaqI TCGA 4 cut(s) 201, 246, 253, 269
TasI AATT 2 cut(s) 96, 162
TfiI GAWTC 3 cut(s) 173, 266, 287
Tru1I TTAA 2 cut(s) 165, 335
Tru9I TTAA 2 cut(s) 165, 335
TscAI CASTG 1 cut(s) 317
TseFI GTSAC 1 cut(s) 3
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 1 cut(s) 279
TspRI CASTG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 47
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.