RchiOBHm_Chr5g0048801

Frigida-like protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
46067759 .. 46071153
3395 bp
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UTR
Exon/CDS
Intron
PRQ32650

Sequence Viewer

Length: 471 bp
ATGTCAAAGGTTATATCACAGTGGAAGTTTACAAGGATGGTTCTCCAGAGGTTGTGGATAGATTTCTCGATTTATGGTTTTATTCAGAATCTTATCAAGAGGAAGCAACTAATTGATGCTGTTAGATGCATTTGCATCTTGCAGTTAATTGACAAGTTCTGCCAAAAAAAAAAAAAAAGAATTTATCCAACCTCTGACTGCATACATGGCTCCATACACTCTAAACAAAAAAGTAATTACACTATTGGTTCATCACAACCTCAACCAACCATTACAAAGTTCATTCAGCACAAACTGGAAGAAAAAGAGGAGGAAAGAAGTGAAAACATAGGACAAAATGATCTTCTTGCACGATACAGAATAATCTGCTACCTCCAATACAAAAACAGCATCACAGGCTACATTCATAGCAACTTTGAATCTAGCTGCCACATTCATTGGCAAGAGTCACCACAACATTCATATCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

18.64

Weight (kDa)

9.49

Isoelectric Point (pI)

60.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022778)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0048801
rosa_roxburghii Rroxscaffold_1G00061380
rosa_samantha Rh5BG331100 Rh5DG116200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 180
AgsI TTSAA 1 cut(s) 419
AluBI AGCT 1 cut(s) 426
AluI AGCT 1 cut(s) 426
ApeKI GCWGC 1 cut(s) 426
ApoI RAATTY 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 441
BbvI GCAGC 1 cut(s) 413
BccI CCATC 1 cut(s) 31
BfaI CTAG 1 cut(s) 423
BisI GCNGC 1 cut(s) 427
BlsI GCNGC 1 cut(s) 428
BmiI GGNNCC 1 cut(s) 211
BmsI GCATC 4 cut(s) 106, 116, 144, 399
BpmI CTGGAG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 1 cut(s) 413
Bsp143I GATC 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 211
BsrI ACTGG 1 cut(s) 300
BssMI GATC 1 cut(s) 340
Bst4CI ACNGT 1 cut(s) 21
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 1 cut(s) 343
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 2 cut(s) 207, 396
BstV1I GCAGC 1 cut(s) 413
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 26
CspCI CAANNNNNGTGG 2 cut(s) 419, 454
CviAII CATG 1 cut(s) 206
CviJI RGCY 3 cut(s) 210, 399, 426
CviKI_1 RGCY 3 cut(s) 210, 399, 426
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
EcoT22I ATGCAT 1 cut(s) 131
FaeI CATG 1 cut(s) 209
FaiI YATR 8 cut(s) 14, 75, 203, 207, 215, 329, 408, 463
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 427
FokI GGATG 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 427
FspBI CTAG 1 cut(s) 423
GluI GCNGC 1 cut(s) 427
GsuI CTGGAG 1 cut(s) 29
Hin1II CATG 1 cut(s) 209
HinfI GANTC 3 cut(s) 88, 419, 446
HphI GGTGA 1 cut(s) 441
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 2 cut(s) 87, 196
Hpy188III TCNNGA 3 cut(s) 46, 67, 97
Hpy8I GTNNAC 1 cut(s) 30
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4V TGCA 5 cut(s) 129, 135, 142, 201, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 396
Hsp92II CATG 1 cut(s) 209
Kzo9I GATC 1 cut(s) 340
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 3 cut(s) 59, 281, 381
Lsp1109I GCAGC 1 cut(s) 413
LweI GCATC 4 cut(s) 106, 116, 144, 399
MaeI CTAG 1 cut(s) 423
MaeIII GTNAC 1 cut(s) 447
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 2 cut(s) 311, 335
MluCI AATT 4 cut(s) 111, 147, 180, 235
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 7 cut(s) 42, 93, 202, 270, 301, 304, 383
Mph1103I ATGCAT 1 cut(s) 131
MseI TTAA 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 207, 396
NdeII GATC 1 cut(s) 340
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 447
NsiI ATGCAT 1 cut(s) 131
PfeI GAWTC 2 cut(s) 88, 419
PkrI GCNGC 1 cut(s) 428
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PspN4I GGNNCC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 1 cut(s) 427
Sau3AI GATC 1 cut(s) 340
SchI GAGTC 1 cut(s) 455
SetI ASST 6 cut(s) 12, 53, 194, 262, 375, 428
SfaNI GCATC 4 cut(s) 106, 116, 144, 399
Sse9I AATT 4 cut(s) 111, 147, 180, 235
SspMI CTAG 1 cut(s) 423
TaaI ACNGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 68
TasI AATT 4 cut(s) 111, 147, 180, 235
TfiI GAWTC 2 cut(s) 88, 419
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 1 cut(s) 447
TseI GCWGC 1 cut(s) 426
Tsp45I GTSAC 1 cut(s) 447
TspDTI ATGAA 5 cut(s) 240, 271, 395, 425, 450
TspRI CASTG 1 cut(s) 26
XapI RAATTY 1 cut(s) 180
XspI CTAG 1 cut(s) 423
Zsp2I ATGCAT 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.