Rroxscaffold_1G00061380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0022778
Physical Location & Seq
Forward (+)
83537617 .. 83548735
11119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00061380.1

Sequence Viewer

Length: 816 bp
ATGAACTGCGGATTAGGACTAGAGAAAGATTTCCAAACCTGTTTAATGAGTACTATCATCCAAATGTTTATACCATCAAGCCTTCTCAGATCCCTCGGGCGTCAGCCAGTGCTATGGCATTTGGCATGGGGTTGTTCAGTGGCAAAGGAAATCTTGGCCCAGGCAAAACATCAAGCTTTTGCTGTAACCAGTGAAAACCGTGCGAGTGACATAGTGCTGAGACTGTTGTTAACCAAATCAAAAATGAGCCAAGGTTTATACGATATATCCAGTGTGGAGGTAGGCCGGCCAACATTTCTATTGACAAATAGGAAGTTTCCAAGTCCATGCCCAAAGAAGAAGACTGATCGGAGAGAGAAGGAGAAGAGGGGGCGGGAAGAAGAAGAGGAGGAATCTGGACACATCATGAGGTTGGATCCTGAAGAACCAAAAACAAACCACCTCAACAAATTGTATCCTCAATCAACCATTACAGAGTTCATTGAGCACAAACTGGAAGAAAAAGTGAAGGAAAGAAGTGAAAACGTAGGACAAAATGTTCTTGGACGATGCAAAATAATCTGCTACCTCCAATACAAAAACAGCATCACAGGCTACATTCATAGCAACTTTGAATCAAGCTGCCACATTCATTTGCAAGACTCACCACAATATTCATATCGATTGAAGAGATACTTGGAGATGGGGCATGTTGATGGAGAGCTGACTCTCGAGAAGCTTATCTGCTTTGCTTGCATTTTAGCTAAAAATTCAAAAGCTGTACCGACCTCAAAGGCTACGTACACGGTACACCTTCCGAATTCTTTACCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

30.95

Weight (kDa)

8.87

Isoelectric Point (pI)

65.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022778)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0048801
rosa_roxburghii Rroxscaffold_1G00061380
rosa_samantha Rh5BG331100 Rh5DG116200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 9, 373
AclWI GGATC 3 cut(s) 84, 410, 423
AcoI YGGCCR 1 cut(s) 287
AcsI RAATTY 2 cut(s) 748, 799
AcuI CTGAAG 1 cut(s) 441
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 4 cut(s) 52, 762, 782, 789
AgsI TTSAA 3 cut(s) 614, 667, 753
AjnI CCWGG 1 cut(s) 159
AjuI GAANNNNNNNTTGG 2 cut(s) 659, 691
AloI GAACNNNNNNTCC 2 cut(s) 522, 554
AluBI AGCT 6 cut(s) 176, 621, 703, 718, 743, 758
AluI AGCT 6 cut(s) 176, 621, 703, 718, 743, 758
Alw21I GWGCWC 1 cut(s) 489
Alw26I GTCTC 1 cut(s) 214
AlwI GGATC 3 cut(s) 84, 410, 423
Ama87I CYCGRG 2 cut(s) 95, 710
AoxI GGCC 3 cut(s) 156, 283, 287
ApeKI GCWGC 1 cut(s) 621
ApoI RAATTY 2 cut(s) 748, 799
Asp700I GAANNNNTTC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 636
AvaI CYCGRG 2 cut(s) 95, 710
BamHI GGATCC 1 cut(s) 415
BbsI GAAGAC 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 608
BccI CCATC 3 cut(s) 82, 676, 689
BciT130I CCWGG 1 cut(s) 161
BciVI GTATCC 1 cut(s) 465
BcoDI GTCTC 1 cut(s) 214
BfaI CTAG 1 cut(s) 20
BfuI GTATCC 1 cut(s) 465
BisI GCNGC 1 cut(s) 622
BlsI GCNGC 1 cut(s) 623
BmcAI AGTACT 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 161
BmeT110I CYCGRG 2 cut(s) 95, 710
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 2 cut(s) 539, 594
BpiI GAAGAC 1 cut(s) 347
Bsa29I ATCGAT 1 cut(s) 661
BsaAI YACGTR 1 cut(s) 780
BsaHI GRCGYC 1 cut(s) 100
BsaJI CCNNGG 3 cut(s) 94, 159, 250
Bse118I RCCGGY 1 cut(s) 285
Bse1I ACTGG 4 cut(s) 107, 189, 270, 498
BseBI CCWGG 1 cut(s) 161
BseCI ATCGAT 1 cut(s) 661
BseDI CCNNGG 3 cut(s) 94, 159, 250
BseGI GGATG 1 cut(s) 57
BseMII CTCAG 2 cut(s) 100, 209
BseNI ACTGG 4 cut(s) 107, 189, 270, 498
BseRI GAGGAG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 608
BshFI GGCC 3 cut(s) 158, 285, 289
BshVI ATCGAT 1 cut(s) 661
BsiHKAI GWGCWC 1 cut(s) 489
BsiHKCI CYCGRG 2 cut(s) 95, 710
BsiSI CCGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 214
BsnI GGCC 3 cut(s) 158, 285, 289
BsoBI CYCGRG 2 cut(s) 95, 710
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 3 cut(s) 89, 346, 415
BspACI CCGC 2 cut(s) 9, 373
BspANI GGCC 3 cut(s) 158, 285, 289
BspCNI CTCAG 2 cut(s) 99, 210
BspDI ATCGAT 1 cut(s) 661
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 1 cut(s) 417
BspPI GGATC 3 cut(s) 84, 410, 423
BsrFI RCCGGY 1 cut(s) 285
BsrI ACTGG 4 cut(s) 107, 189, 270, 498
BssAI RCCGGY 1 cut(s) 285
BssECI CCNNGG 3 cut(s) 94, 159, 250
BssMI GATC 3 cut(s) 89, 346, 415
BssNI GRCGYC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 3 cut(s) 200, 225, 787
Bst6I CTCTTC 3 cut(s) 359, 378, 662
BstACI GRCGYC 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 780
BstC8I GCNNGC 2 cut(s) 287, 733
BstDEI CTNAG 2 cut(s) 86, 218
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 3 cut(s) 92, 349, 418
BstMAI GTCTC 1 cut(s) 214
BstMBI GATC 3 cut(s) 89, 346, 415
BstMWI GCNNNNNNNGC 2 cut(s) 591, 732
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 692
BstSCI CCNGG 1 cut(s) 159
BstSNI TACGTA 1 cut(s) 780
BstV1I GCAGC 1 cut(s) 608
BstV2I GAAGAC 1 cut(s) 347
BstX2I RGATCY 2 cut(s) 89, 415
BstXI CCANNNNNNTGG 1 cut(s) 114
BstYI RGATCY 2 cut(s) 89, 415
Bsu15I ATCGAT 1 cut(s) 661
BsuI GTATCC 1 cut(s) 465
BsuRI GGCC 3 cut(s) 158, 285, 289
BsuTUI ATCGAT 1 cut(s) 661
BtsCI GGATG 1 cut(s) 57
BtsIMutI CAGTG 4 cut(s) 114, 144, 196, 277
Cac8I GCNNGC 2 cut(s) 287, 733
CciI TCATGA 1 cut(s) 405
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 661
CseI GACGC 1 cut(s) 89
Csp6I GTAC 4 cut(s) 51, 761, 781, 788
CviAII CATG 5 cut(s) 126, 327, 406, 689, 813
CviQI GTAC 4 cut(s) 51, 761, 781, 788
DdeI CTNAG 2 cut(s) 86, 218
DpnI GATC 3 cut(s) 91, 348, 417
DpnII GATC 3 cut(s) 89, 346, 415
EaeI YGGCCR 1 cut(s) 287
Eam1104I CTCTTC 3 cut(s) 359, 378, 662
EarI CTCTTC 3 cut(s) 359, 378, 662
Eco105I TACGTA 1 cut(s) 780
Eco130I CCWWGG 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 441
Eco88I CYCGRG 2 cut(s) 95, 710
EcoRI GAATTC 1 cut(s) 799
EcoRII CCWGG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 250
FaeI CATG 5 cut(s) 129, 330, 409, 692, 816
FalI AAGNNNNNCTT 4 cut(s) 137, 169, 659, 691
FatI CATG 5 cut(s) 125, 326, 405, 688, 812
FauI CCCGC 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 622
FokI GGATG 1 cut(s) 44
FseI GGCCGGCC 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 622
FspBI CTAG 1 cut(s) 20
GluI GCNGC 1 cut(s) 622
HaeIII GGCC 3 cut(s) 158, 285, 289
HapII CCGG 1 cut(s) 286
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 5 cut(s) 129, 330, 409, 692, 816
HincII GTYRAC 1 cut(s) 231
HindII GTYRAC 1 cut(s) 231
HindIII AAGCTT 2 cut(s) 174, 716
HinfI GANTC 4 cut(s) 392, 614, 641, 706
HpaI GTTAAC 1 cut(s) 231
HpaII CCGG 1 cut(s) 286
HphI GGTGA 1 cut(s) 636
Hpy166II GTNNAC 3 cut(s) 231, 783, 790
Hpy188I TCNGA 3 cut(s) 89, 351, 798
Hpy188III TCNNGA 5 cut(s) 396, 406, 419, 710, 712
Hpy8I GTNNAC 3 cut(s) 231, 783, 790
HpyAV CCTTC 4 cut(s) 92, 352, 502, 803
HpyCH4III ACNGT 3 cut(s) 200, 225, 787
HpyCH4IV ACGT 2 cut(s) 525, 779
HpyCH4V TGCA 4 cut(s) 552, 637, 735, 812
HpyF10VI GCNNNNNNNGC 2 cut(s) 591, 732
HpyF3I CTNAG 2 cut(s) 86, 218
HpySE526I ACGT 2 cut(s) 525, 779
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 5 cut(s) 129, 330, 409, 692, 816
KroI GCCGGC 1 cut(s) 285
KroNI GCCGGC 1 cut(s) 287
KspAI GTTAAC 1 cut(s) 231
Kzo9I GATC 3 cut(s) 89, 346, 415
Lsp1109I GCAGC 1 cut(s) 608
LweI GCATC 2 cut(s) 539, 594
MaeI CTAG 1 cut(s) 20
MaeII ACGT 2 cut(s) 525, 779
MaeIII GTNAC 2 cut(s) 184, 206
MalI GATC 3 cut(s) 91, 348, 417
MboI GATC 3 cut(s) 89, 346, 415
MboII GAAGA 9 cut(s) 349, 352, 376, 389, 392, 395, 434, 509, 679
MflI RGATCY 2 cut(s) 89, 415
MhlI GDGCHC 1 cut(s) 489
MluCI AATT 3 cut(s) 449, 748, 799
MlyI GAGTC 2 cut(s) 635, 700
MmeI TCCRAC 1 cut(s) 393
MroNI GCCGGC 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 2 cut(s) 44, 230
MslI CAYNNNNRTG 2 cut(s) 62, 693
MspI CCGG 1 cut(s) 286
MspR9I CCNGG 1 cut(s) 161
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 2 cut(s) 591, 732
NaeI GCCGGC 1 cut(s) 287
NdeII GATC 3 cut(s) 89, 346, 415
NgoMIV GCCGGC 1 cut(s) 285
NlaIII CATG 5 cut(s) 129, 330, 409, 692, 816
NlaIV GGNNCC 1 cut(s) 417
NmuCI GTSAC 1 cut(s) 206
NspI RCATGY 1 cut(s) 692
PaeR7I CTCGAG 1 cut(s) 710
PagI TCATGA 1 cut(s) 405
PdiI GCCGGC 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 392, 614
PkrI GCNGC 1 cut(s) 623
PleI GAGTC 2 cut(s) 635, 700
PpsI GAGTC 2 cut(s) 635, 700
Ppu21I YACGTR 1 cut(s) 780
Psp6I CCWGG 1 cut(s) 159
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 1 cut(s) 157
PsuI RGATCY 2 cut(s) 89, 415
RigI GGCCGGCC 1 cut(s) 289
RsaI GTAC 4 cut(s) 52, 762, 782, 789
RsaNI GTAC 4 cut(s) 51, 761, 781, 788
RseI CAYNNNNRTG 2 cut(s) 62, 693
SaqAI TTAA 2 cut(s) 44, 230
SatI GCNGC 1 cut(s) 622
Sau3AI GATC 3 cut(s) 89, 346, 415
Sau96I GGNCC 1 cut(s) 157
ScaI AGTACT 1 cut(s) 52
SchI GAGTC 2 cut(s) 635, 700
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 489
SfaNI GCATC 2 cut(s) 539, 594
Sfr274I CTCGAG 1 cut(s) 710
SlaI CTCGAG 1 cut(s) 710
SmiMI CAYNNNNRTG 2 cut(s) 62, 693
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SnaBI TACGTA 1 cut(s) 780
Sse9I AATT 3 cut(s) 449, 748, 799
SsiI CCGC 2 cut(s) 9, 373
SspI AATATT 1 cut(s) 653
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 250
TaaI ACNGT 3 cut(s) 200, 225, 787
TaiI ACGT 2 cut(s) 528, 782
TaqI TCGA 2 cut(s) 661, 711
TasI AATT 3 cut(s) 449, 748, 799
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 2 cut(s) 392, 614
Tru1I TTAA 2 cut(s) 44, 230
Tru9I TTAA 2 cut(s) 44, 230
TscAI CASTG 4 cut(s) 114, 144, 196, 277
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 1 cut(s) 621
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 5 cut(s) 17, 469, 590, 620, 645
TspRI CASTG 4 cut(s) 114, 144, 196, 277
XapI RAATTY 2 cut(s) 748, 799
XceI RCATGY 1 cut(s) 692
XhoI CTCGAG 1 cut(s) 710
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 1 cut(s) 20
ZrmI AGTACT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.