Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0022778

Physical Location & Seq

Genomic Coordinates Reverse (-)

10528654 .. 10529672

Gene Structure 1019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG116200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAACTGCGGATTAGGACTAGAGAAAGATTTCCAAACCTGTTTGATGAGGACTATCATCCAAATGTTTATACCATCAAGCCTTCTCAGATCCCTCGGGCGTCAGCCAGTGCTATGGCATTTGGCATGGGGTTGTTCAGTGGCAAAGGAAATCTTGGCCCAGGCAAAACATCAAGCTTTTGCTGTAACCAGTGAAAACCGTGCGAGTGACATAGTGCTGAGGTTTCATGATTGTTGCAATAACTACAAGGACTATCGGAAAAGTCAGGAGCCATCTGCTAATAAACTTAAGGAACCAGTCTTCCAACCAACTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00010 ko00562 ko01100 map00010 map00562 map01100

Pfam Domains

Protein Families

His_Phos_2

Protein Analysis

105

Amino Acids

11.97

Weight (kDa)

8.93

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022778)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0048801
rosa_roxburghii	Rroxscaffold_1G00061380
rosa_samantha	Rh5BG331100 Rh5DG116200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	9
AclWI	GGATC	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	100
AflII	CTTAAG	1 cut(s)	287
AjnI	CCWGG	1 cut(s)	159
AloI	GAACNNNNNNTCC	2 cut(s)	285, 317
AluBI	AGCT	1 cut(s)	176
AluI	AGCT	1 cut(s)	176
AlwI	GGATC	1 cut(s)	84
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	156
Asp700I	GAANNNNTTC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	157
AvaI	CYCGRG	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	292
BbvCI	CCTCAGC	1 cut(s)	218
BccI	CCATC	2 cut(s)	82, 280
BciT130I	CCWGG	1 cut(s)	161
BfaI	CTAG	1 cut(s)	20
BfrI	CTTAAG	1 cut(s)	287
Bme1390I	CCNGG	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	270, 294
BmrFI	CCNGG	1 cut(s)	161
BpiI	GAAGAC	1 cut(s)	292
Bpu10I	CCTNAGC	1 cut(s)	218
BsaHI	GRCGYC	1 cut(s)	100
BsaJI	CCNNGG	2 cut(s)	94, 159
Bse1I	ACTGG	3 cut(s)	107, 189, 296
BseBI	CCWGG	1 cut(s)	161
BseDI	CCNNGG	2 cut(s)	94, 159
BseGI	GGATG	1 cut(s)	57
BseMII	CTCAG	2 cut(s)	100, 209
BseNI	ACTGG	3 cut(s)	107, 189, 296
BshFI	GGCC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	95
BsnI	GGCC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	2 cut(s)	99, 210
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	2 cut(s)	270, 294
BspPI	GGATC	1 cut(s)	84
BspTI	CTTAAG	1 cut(s)	287
BsrI	ACTGG	3 cut(s)	107, 189, 296
BssECI	CCNNGG	2 cut(s)	94, 159
BssMI	GATC	1 cut(s)	89
BssNI	GRCGYC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	200
BstACI	GRCGYC	1 cut(s)	100
BstAFI	CTTAAG	1 cut(s)	287
BstDEI	CTNAG	2 cut(s)	86, 218
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	161
BstSCI	CCNGG	1 cut(s)	159
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	89
BstXI	CCANNNNNNTGG	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	57
BtsIMutI	CAGTG	3 cut(s)	114, 144, 196
CciI	TCATGA	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	89
CviAII	CATG	2 cut(s)	126, 227
CviJI	RGCY	5 cut(s)	81, 106, 158, 176, 271
CviKI_1	RGCY	5 cut(s)	81, 106, 158, 176, 271
DdeI	CTNAG	2 cut(s)	86, 218
DpnI	GATC	1 cut(s)	91
DpnII	GATC	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	129, 230
FaiI	YATR	5 cut(s)	71, 115, 127, 212, 228
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FatI	CATG	2 cut(s)	125, 226
FokI	GGATG	1 cut(s)	44
FspBI	CTAG	1 cut(s)	20
HaeIII	GGCC	1 cut(s)	158
HgaI	GACGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	100
Hin1II	CATG	2 cut(s)	129, 230
HindIII	AAGCTT	1 cut(s)	174
Hpy188I	TCNGA	2 cut(s)	89, 258
Hpy188III	TCNNGA	2 cut(s)	227, 266
HpyAV	CCTTC	1 cut(s)	92
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	237
HpyF3I	CTNAG	2 cut(s)	86, 218
Hsp92I	GRCGYC	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	129, 230
Kzo9I	GATC	1 cut(s)	89
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	7 cut(s)	52, 120, 146, 173, 202, 251, 309
MaeI	CTAG	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	184, 206
MalI	GATC	1 cut(s)	91
MboI	GATC	1 cut(s)	89
MboII	GAAGA	1 cut(s)	292
MflI	RGATCY	1 cut(s)	89
MnlI	CCTC	3 cut(s)	42, 104, 213
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	62
MspCI	CTTAAG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	161
NdeII	GATC	1 cut(s)	89
NlaIII	CATG	2 cut(s)	129, 230
NlaIV	GGNNCC	2 cut(s)	270, 294
NmuCI	GTSAC	1 cut(s)	206
PagI	TCATGA	1 cut(s)	226
PdmI	GAANNNNTTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	270, 294
PspPI	GGNCC	1 cut(s)	157
PsuI	RGATCY	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	288
Sau3AI	GATC	1 cut(s)	89
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	161
SetI	ASST	3 cut(s)	41, 178, 224
SmiMI	CAYNNNNRTG	1 cut(s)	62
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	159
TaaI	ACNGT	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	3 cut(s)	114, 144, 196
TseFI	GTSAC	1 cut(s)	206
Tsp45I	GTSAC	1 cut(s)	206
TspDTI	ATGAA	2 cut(s)	17, 215
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	3 cut(s)	114, 144, 196
Vha464I	CTTAAG	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.