RchiOBHm_Chr5g0057521

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0025035
Physical Location & Seq
Forward (+)
61458030 .. 61458813
784 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33429

Sequence Viewer

Length: 459 bp
ATGTTTCCTTCACTCTTGATTACTTTAGAAGCAGCATATTTGCTTAAGAAGTTGTCATTAGATTCGCAGACCAAGACCTTGGAAATTCTAGAGCCTACAAAGAAGCCTTCTGTTAACCAATATGGGTCTATTGATTATGGCAATGCTGCAAATGGTCAGATCCAATTTGATCTCTCTGTGACTCCACTGTCGACTGATTTCATGGATCAATCTTTCTCCTATCTCCCAAATGGTTATCCATCAACAGCCTATTACTATAGAGGCTATGATGGGACTGGCGACTGGGATGAGTACTGGAGATATATGAATCCAGAGGGAGTAGATATGACTTCCGGGGTTTATGGAGATAACGGGTCTCTTATGTACCACCATGGTTATGGGTATGCACTGTATGGGCCTTATTCACCAGCAGCTTCCCCTGCCCCATCTATGGGAACACTACTAGAATTTTGGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

152

Amino Acids

16.99

Weight (kDa)

4.32

Isoelectric Point (pI)

29.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025035)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0057521
rosa_samantha Rh5AG376500 Rh5BG387300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 187
AccI GTMKAC 1 cut(s) 191
AclWI GGATC 2 cut(s) 154, 213
AcsI RAATTY 2 cut(s) 84, 446
AfaI GTAC 2 cut(s) 293, 365
AfiI CCNNNNNNNGG 2 cut(s) 430, 431
AflII CTTAAG 1 cut(s) 44
AluBI AGCT 1 cut(s) 413
AluI AGCT 1 cut(s) 413
Alw26I GTCTC 1 cut(s) 360
AlwI GGATC 2 cut(s) 154, 213
AoxI GGCC 2 cut(s) 395, 452
ApeKI GCWGC 3 cut(s) 32, 146, 410
ApoI RAATTY 2 cut(s) 84, 446
AspS9I GGNCC 1 cut(s) 395
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 1 cut(s) 396
BbvI GCAGC 3 cut(s) 44, 133, 422
BccI CCATC 3 cut(s) 247, 263, 433
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 360
BfaI CTAG 2 cut(s) 89, 443
BfmI CTRYAG 1 cut(s) 256
BfrI CTTAAG 1 cut(s) 44
BisI GCNGC 3 cut(s) 33, 147, 411
BlsI GCNGC 3 cut(s) 34, 148, 412
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 395
BmrFI CCNGG 1 cut(s) 334
BmrI ACTGGG 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 316
BpuMI CCSGG 1 cut(s) 334
BsaI GGTCTC 1 cut(s) 360
BsaJI CCNNGG 3 cut(s) 78, 333, 370
Bsc4I CCNNNNNNNGG 2 cut(s) 430, 431
Bse1I ACTGG 3 cut(s) 280, 287, 299
Bse3DI GCAATG 1 cut(s) 148
BseDI CCNNGG 3 cut(s) 78, 333, 370
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 430, 431
BseMI GCAATG 1 cut(s) 148
BseNI ACTGG 3 cut(s) 280, 287, 299
BseXI GCAGC 3 cut(s) 44, 133, 422
BshFI GGCC 2 cut(s) 397, 454
BsiSI CCGG 1 cut(s) 333
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 430, 431
BsmAI GTCTC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 2 cut(s) 397, 454
Bso31I GGTCTC 1 cut(s) 360
Bsp143I GATC 3 cut(s) 159, 169, 205
Bsp19I CCATGG 1 cut(s) 370
BspANI GGCC 2 cut(s) 397, 454
BspPI GGATC 2 cut(s) 154, 213
BspTI CTTAAG 1 cut(s) 44
BspTNI GGTCTC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 3 cut(s) 280, 287, 299
BssECI CCNNGG 3 cut(s) 78, 333, 370
BssMI GATC 3 cut(s) 159, 169, 205
BssT1I CCWWGG 2 cut(s) 78, 370
Bst4CI ACNGT 2 cut(s) 189, 390
BstAFI CTTAAG 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 456
BstDSI CCRYGG 1 cut(s) 370
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 3 cut(s) 162, 172, 208
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 3 cut(s) 159, 169, 205
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstSCI CCNGG 1 cut(s) 332
BstSFI CTRYAG 1 cut(s) 256
BstV1I GCAGC 3 cut(s) 44, 133, 422
BstX2I RGATCY 1 cut(s) 159
BstXI CCANNNNNNTGG 2 cut(s) 79, 377
BstYI RGATCY 1 cut(s) 159
BsuRI GGCC 2 cut(s) 397, 454
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 2 cut(s) 185, 386
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 2 cut(s) 292, 364
CviAII CATG 2 cut(s) 202, 371
CviJI RGCY 7 cut(s) 94, 106, 248, 264, 397, 413, 454
CviKI_1 RGCY 7 cut(s) 94, 106, 248, 264, 397, 413, 454
CviQI GTAC 2 cut(s) 292, 364
DdeI CTNAG 1 cut(s) 456
DpnI GATC 3 cut(s) 161, 171, 207
DpnII GATC 3 cut(s) 159, 169, 205
DrdI GACNNNNNNGTC 1 cut(s) 187
DseDI GACNNNNNNGTC 1 cut(s) 187
Eco130I CCWWGG 2 cut(s) 78, 370
Eco31I GGTCTC 1 cut(s) 360
EcoT14I CCWWGG 2 cut(s) 78, 370
ErhI CCWWGG 2 cut(s) 78, 370
FaeI CATG 2 cut(s) 205, 374
FaqI GGGAC 1 cut(s) 286
FatI CATG 2 cut(s) 201, 370
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 3 cut(s) 33, 147, 411
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 3 cut(s) 33, 147, 411
FspBI CTAG 2 cut(s) 89, 443
GluI GCNGC 3 cut(s) 33, 147, 411
GsuI CTGGAG 1 cut(s) 316
HaeIII GGCC 2 cut(s) 397, 454
HapII CCGG 1 cut(s) 333
Hin1II CATG 2 cut(s) 205, 374
HincII GTYRAC 2 cut(s) 115, 192
HindII GTYRAC 2 cut(s) 115, 192
HinfI GANTC 3 cut(s) 62, 181, 307
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 396
Hpy166II GTNNAC 2 cut(s) 115, 192
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 3 cut(s) 16, 89, 311
Hpy8I GTNNAC 2 cut(s) 115, 192
HpyAV CCTTC 2 cut(s) 18, 117
HpyCH4III ACNGT 2 cut(s) 189, 390
HpyCH4V TGCA 2 cut(s) 149, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 1 cut(s) 456
Hsp92II CATG 2 cut(s) 205, 374
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 3 cut(s) 159, 169, 205
LpnPI CCDG 7 cut(s) 261, 268, 280, 324, 346, 420, 432
Lsp1109I GCAGC 3 cut(s) 44, 133, 422
MaeI CTAG 2 cut(s) 89, 443
MaeIII GTNAC 1 cut(s) 178
MalI GATC 3 cut(s) 161, 171, 207
MboI GATC 3 cut(s) 159, 169, 205
MflI RGATCY 1 cut(s) 159
MluCI AATT 3 cut(s) 84, 164, 446
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 2 cut(s) 254, 307
MseI TTAA 2 cut(s) 45, 114
MslI CAYNNNNRTG 1 cut(s) 375
MspCI CTTAAG 1 cut(s) 44
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 334
MwoI GCNNNNNNNGC 1 cut(s) 419
NciI CCSGG 1 cut(s) 334
NcoI CCATGG 1 cut(s) 370
NdeII GATC 3 cut(s) 159, 169, 205
NlaIII CATG 2 cut(s) 205, 374
NmuCI GTSAC 1 cut(s) 178
PfeI GAWTC 2 cut(s) 62, 307
PkrI GCNGC 3 cut(s) 34, 148, 412
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 395
PsuI RGATCY 1 cut(s) 159
RsaI GTAC 2 cut(s) 293, 365
RsaNI GTAC 2 cut(s) 292, 364
RseI CAYNNNNRTG 1 cut(s) 375
SalI GTCGAC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 45, 114
SatI GCNGC 3 cut(s) 33, 147, 411
Sau3AI GATC 3 cut(s) 159, 169, 205
Sau96I GGNCC 1 cut(s) 395
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 1 cut(s) 334
SetI ASST 2 cut(s) 80, 415
SfcI CTRYAG 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 375
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 3 cut(s) 84, 164, 446
SspMI CTAG 2 cut(s) 89, 443
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 2 cut(s) 78, 370
TaaI ACNGT 2 cut(s) 189, 390
TaqI TCGA 1 cut(s) 191
TasI AATT 3 cut(s) 84, 164, 446
TatI WGTACW 1 cut(s) 291
TfiI GAWTC 2 cut(s) 62, 307
Tru1I TTAA 2 cut(s) 45, 114
Tru9I TTAA 2 cut(s) 45, 114
TscAI CASTG 2 cut(s) 192, 393
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 3 cut(s) 32, 146, 410
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 190, 320
TspRI CASTG 2 cut(s) 192, 393
Vha464I CTTAAG 1 cut(s) 44
XapI RAATTY 2 cut(s) 84, 446
XbaI TCTAGA 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 191
XspI CTAG 2 cut(s) 89, 443
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.