Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0025035

Physical Location & Seq

Genomic Coordinates Forward (+)

64088072 .. 64091143

Gene Structure 3072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG376500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCGACCGTTGCTCCTCCTGCAGATCAAGCAGCAGATTTGCTTCAGAAGTTGTCATTAGATTCGCAGACCAAGACCCTGGAAATTCCAGAGCCTACAAAGAAGCCTTCTGTTAACCAATATGGCCTATTACTAAGAGGCTATGATGGGACTGGCGACTGGGATGAGTACTGGAGATATATGAATCCAGAGGGAGTAGATATGACTTCCGGGGTTTATGGAGATAACGGGTGTCTTATGTACCACCATGATTATGGGTATGCACTGTATGGGCTTTATTCACTAGCAGCTTCCCCTGCCCCATTTATGGGAAATGATGGGCAGCATAGACCTGTAGCAAATACACCCATTACTTCTTCAAACTCGAATGGCAATAAAATTCCATTTTTGAGGAATCAGAACTACCGTCCAAATTTTCACTCATGTTGCAATATTGGTGAGGGGGGTATTGCCCTTAAAGCTGTACATGGATCGGCACCTGATATTGCTAGAAAGGTCGATCTGGTGAACCAGAAAGAAGCAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

175

Amino Acids

19.08

Weight (kDa)

5.65

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025035)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0057521
rosa_samantha	Rh5AG376500 Rh5BG387300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	475
AclWI	GGATC	1 cut(s)	478
AcsI	RAATTY	3 cut(s)	84, 378, 412
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	3 cut(s)	170, 242, 465
AfiI	CCNNNNNNNGG	2 cut(s)	307, 308
AgsI	TTSAA	1 cut(s)	360
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	2 cut(s)	290, 461
AluI	AGCT	2 cut(s)	290, 461
AlwI	GGATC	1 cut(s)	478
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	4 cut(s)	32, 287, 322, 521
ApoI	RAATTY	3 cut(s)	84, 378, 412
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	449, 517
BanI	GGYRCC	1 cut(s)	475
BbvI	GCAGC	3 cut(s)	44, 299, 334
BccI	CCATC	2 cut(s)	140, 311
BciT130I	CCWGG	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	211
BfaI	CTAG	3 cut(s)	284, 489, 526
BfmI	CTRYAG	2 cut(s)	21, 333
BisI	GCNGC	4 cut(s)	33, 288, 323, 522
BlsI	GCNGC	4 cut(s)	34, 289, 324, 523
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	80, 211
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	2 cut(s)	80, 211
BmrI	ACTGGG	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	193
BpuMI	CCSGG	1 cut(s)	211
BsaJI	CCNNGG	2 cut(s)	78, 210
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 308
Bse1I	ACTGG	3 cut(s)	157, 164, 176
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	2 cut(s)	78, 210
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	2 cut(s)	307, 308
BseNI	ACTGG	3 cut(s)	157, 164, 176
BseRI	GAGGAG	1 cut(s)	6
BseXI	GCAGC	3 cut(s)	44, 299, 334
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	475
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	2 cut(s)	307, 308
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	126
Bsp1407I	TGTACA	1 cut(s)	463
Bsp143I	GATC	3 cut(s)	25, 470, 499
BspANI	GGCC	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	477
BspMAI	CTGCAG	1 cut(s)	25
BspPI	GGATC	1 cut(s)	478
BspT107I	GGYRCC	1 cut(s)	475
BsrGI	TGTACA	1 cut(s)	463
BsrI	ACTGG	3 cut(s)	157, 164, 176
BssECI	CCNNGG	2 cut(s)	78, 210
BssMI	GATC	3 cut(s)	25, 470, 499
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	3 cut(s)	10, 267, 407
BstAUI	TGTACA	1 cut(s)	463
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	3 cut(s)	28, 473, 502
BstMBI	GATC	3 cut(s)	25, 470, 499
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 29, 296, 458
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	78, 209
BstSFI	CTRYAG	2 cut(s)	21, 333
BstV1I	GCAGC	3 cut(s)	44, 299, 334
BstXI	CCANNNNNNTGG	2 cut(s)	79, 254
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	263
Csp6I	GTAC	3 cut(s)	169, 241, 464
CviAII	CATG	3 cut(s)	248, 423, 467
CviJI	RGCY	8 cut(s)	94, 106, 126, 141, 274, 290, 461, 524
CviKI_1	RGCY	8 cut(s)	94, 106, 126, 141, 274, 290, 461, 524
CviQI	GTAC	3 cut(s)	169, 241, 464
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	3 cut(s)	27, 472, 501
DpnII	GATC	3 cut(s)	25, 470, 499
Eco57I	CTGAAG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	78
FaeI	CATG	3 cut(s)	251, 426, 470
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	3 cut(s)	247, 422, 466
Fnu4HI	GCNGC	4 cut(s)	33, 288, 323, 522
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	4 cut(s)	33, 288, 323, 522
FspBI	CTAG	3 cut(s)	284, 489, 526
GluI	GCNGC	4 cut(s)	33, 288, 323, 522
GsuI	CTGGAG	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	210
Hin1II	CATG	3 cut(s)	251, 426, 470
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	3 cut(s)	62, 184, 394
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	2 cut(s)	449, 517
Hpy166II	GTNNAC	2 cut(s)	115, 508
Hpy188I	TCNGA	2 cut(s)	48, 399
Hpy188III	TCNNGA	2 cut(s)	89, 188
Hpy8I	GTNNAC	2 cut(s)	115, 508
HpyAV	CCTTC	1 cut(s)	117
HpyCH4III	ACNGT	3 cut(s)	10, 267, 407
HpyCH4V	TGCA	3 cut(s)	23, 263, 429
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 29, 296, 458
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	3 cut(s)	251, 426, 470
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	3 cut(s)	25, 470, 499
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	3 cut(s)	44, 299, 334
MaeI	CTAG	3 cut(s)	284, 489, 526
MalI	GATC	3 cut(s)	27, 472, 501
MboI	GATC	3 cut(s)	25, 470, 499
MboII	GAAGA	1 cut(s)	348
MluCI	AATT	3 cut(s)	84, 378, 412
MnlI	CCTC	5 cut(s)	27, 131, 184, 384, 433
MseI	TTAA	2 cut(s)	114, 456
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	2 cut(s)	80, 211
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 29, 296, 458
NciI	CCSGG	1 cut(s)	211
NdeII	GATC	3 cut(s)	25, 470, 499
NlaIII	CATG	3 cut(s)	251, 426, 470
NlaIV	GGNNCC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	62, 184, 394
PkrI	GCNGC	4 cut(s)	34, 289, 324, 523
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	477
PstI	CTGCAG	1 cut(s)	25
RsaI	GTAC	3 cut(s)	170, 242, 465
RsaNI	GTAC	3 cut(s)	169, 241, 464
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	114, 456
SatI	GCNGC	4 cut(s)	33, 288, 323, 522
Sau3AI	GATC	3 cut(s)	25, 470, 499
ScaI	AGTACT	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	80, 211
SetI	ASST	5 cut(s)	292, 334, 463, 481, 498
SfcI	CTRYAG	2 cut(s)	21, 333
SmiMI	CAYNNNNRTG	1 cut(s)	252
Sse9I	AATT	3 cut(s)	84, 378, 412
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	3 cut(s)	284, 489, 526
StyD4I	CCNGG	2 cut(s)	78, 209
TaaI	ACNGT	3 cut(s)	10, 267, 407
TaqI	TCGA	2 cut(s)	365, 498
TasI	AATT	3 cut(s)	84, 378, 412
TatI	WGTACW	2 cut(s)	168, 463
TfiI	GAWTC	3 cut(s)	62, 184, 394
Tru1I	TTAA	2 cut(s)	114, 456
Tru9I	TTAA	2 cut(s)	114, 456
TscAI	CASTG	1 cut(s)	270
TseI	GCWGC	4 cut(s)	32, 287, 322, 521
TspDTI	ATGAA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	270
XapI	RAATTY	3 cut(s)	84, 378, 412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	3 cut(s)	284, 489, 526
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.