Rh5BG387300

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0025035
Physical Location & Seq
Forward (+)
61859834 .. 61862955
3122 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG387300.1

Sequence Viewer

Length: 690 bp
ATGCTTCCTTCACTCTTGATTACTTTAGAAGCGGCAGATTTACTTCAGAAGTTGTCATTAGATTCGCAGACCAAGACCCTGGAAATTTCAGAGCCTACAAAGAAGCCTTCTGTTAACCAATATGGGTCTATTGATTATGGCAATGCTGCAAATGGTCAGATCCAATTTGATCTCTCTGTGACTCCACTATCGACTGATTTCATGGATCAATCTTTCTCCTATCTCCCAAATGGTTATCCATCAACAGCCTATTACTATAGAGGCTATGATGGGACTGGCGACTGGGATGAGTACTGGAGATATATGAATCCAGAGGGAGTTGATATGACTTCCGGGGTTTATGGAGATAACGGGTCTCTTATGTACCACCATGGTTATGGGTATGCACTGTATGGGCCTTATTCACCAGCAGCTTCCCCTGCCCTATCTATGGGAAATGATGGGCAGCATAGACTTGTAGCAAATACACCCATTACTTCTTCAAACTCGAATGGCAATAGAATTCCATCTTTGAGGAATCAGAACTACCGTCCAAATTCTCACTTCATGTGGAGCTGCAATCTAAAAAGGTTATCTTCAAATGAAACTGTAGTTCATTTCACCTTCTTCCTCCCACAGAAAACTATGTTCCTCTATTCAAGGATCCATGGAGATTTTGGTGACTGTCTATTTGATTTCTTGTCCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

229

Amino Acids

25.77

Weight (kDa)

5.36

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025035)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0057521
rosa_samantha Rh5AG376500 Rh5BG387300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 32
AclWI GGATC 4 cut(s) 154, 213, 637, 650
AcsI RAATTY 3 cut(s) 84, 501, 535
AcuI CTGAAG 1 cut(s) 29
AfaI GTAC 2 cut(s) 293, 365
AfiI CCNNNNNNNGG 1 cut(s) 430
AgsI TTSAA 3 cut(s) 483, 579, 639
AjnI CCWGG 1 cut(s) 78
AluBI AGCT 2 cut(s) 413, 555
AluI AGCT 2 cut(s) 413, 555
Alw26I GTCTC 1 cut(s) 360
AlwI GGATC 4 cut(s) 154, 213, 637, 650
AoxI GGCC 1 cut(s) 395
ApeKI GCWGC 4 cut(s) 146, 410, 445, 555
ApoI RAATTY 3 cut(s) 84, 501, 535
ArsI GACNNNNNNTTYG 2 cut(s) 653, 685
AspS9I GGNCC 1 cut(s) 395
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 3 cut(s) 396, 592, 671
BamHI GGATCC 1 cut(s) 642
BbvI GCAGC 4 cut(s) 133, 422, 457, 542
BccI CCATC 4 cut(s) 247, 263, 434, 514
BciT130I CCWGG 1 cut(s) 80
BcnI CCSGG 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 360
BfaI CTAG 1 cut(s) 688
BfmI CTRYAG 2 cut(s) 256, 588
BisI GCNGC 5 cut(s) 33, 147, 411, 446, 556
BlsI GCNGC 5 cut(s) 34, 148, 412, 447, 557
BmcAI AGTACT 1 cut(s) 293
Bme1390I CCNGG 2 cut(s) 80, 334
BmgT120I GGNCC 1 cut(s) 395
BmiI GGNNCC 1 cut(s) 644
BmrFI CCNGG 2 cut(s) 80, 334
BmrI ACTGGG 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 292
BpmI CTGGAG 1 cut(s) 316
BpuMI CCSGG 1 cut(s) 334
BsaI GGTCTC 1 cut(s) 360
BsaJI CCNNGG 4 cut(s) 78, 333, 370, 646
Bsc4I CCNNNNNNNGG 1 cut(s) 430
Bse1I ACTGG 3 cut(s) 280, 287, 299
Bse3DI GCAATG 1 cut(s) 148
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 4 cut(s) 78, 333, 370, 646
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 430
BseMI GCAATG 1 cut(s) 148
BseNI ACTGG 3 cut(s) 280, 287, 299
BseXI GCAGC 4 cut(s) 133, 422, 457, 542
BshFI GGCC 1 cut(s) 397
BsiSI CCGG 1 cut(s) 333
BslFI GGGAC 2 cut(s) 286, 667
BslI CCNNNNNNNGG 1 cut(s) 430
BsmAI GTCTC 1 cut(s) 360
BsmFI GGGAC 2 cut(s) 286, 667
BsnI GGCC 1 cut(s) 397
Bso31I GGTCTC 1 cut(s) 360
Bsp143I GATC 4 cut(s) 159, 169, 205, 642
Bsp19I CCATGG 2 cut(s) 370, 646
BspACI CCGC 1 cut(s) 32
BspANI GGCC 1 cut(s) 397
BspLI GGNNCC 1 cut(s) 644
BspPI GGATC 4 cut(s) 154, 213, 637, 650
BspTNI GGTCTC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 148
BsrI ACTGG 3 cut(s) 280, 287, 299
BssECI CCNNGG 4 cut(s) 78, 333, 370, 646
BssMI GATC 4 cut(s) 159, 169, 205, 642
BssT1I CCWWGG 2 cut(s) 370, 646
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 4 cut(s) 390, 530, 589, 665
BstDSI CCRYGG 2 cut(s) 370, 646
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 4 cut(s) 162, 172, 208, 645
BstMAI GTCTC 1 cut(s) 360
BstMBI GATC 4 cut(s) 159, 169, 205, 642
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 78, 332
BstSFI CTRYAG 2 cut(s) 256, 588
BstV1I GCAGC 4 cut(s) 133, 422, 457, 542
BstX2I RGATCY 2 cut(s) 159, 642
BstXI CCANNNNNNTGG 2 cut(s) 79, 377
BstYI RGATCY 2 cut(s) 159, 642
BsuRI GGCC 1 cut(s) 397
BtgI CCRYGG 2 cut(s) 370, 646
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 386
Cfr13I GGNCC 1 cut(s) 395
Csp6I GTAC 2 cut(s) 292, 364
CviAII CATG 4 cut(s) 202, 371, 547, 647
CviJI RGCY 7 cut(s) 94, 106, 248, 264, 397, 413, 555
CviKI_1 RGCY 7 cut(s) 94, 106, 248, 264, 397, 413, 555
CviQI GTAC 2 cut(s) 292, 364
DpnI GATC 4 cut(s) 161, 171, 207, 644
DpnII GATC 4 cut(s) 159, 169, 205, 642
Eco130I CCWWGG 2 cut(s) 370, 646
Eco31I GGTCTC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 29
EcoRI GAATTC 1 cut(s) 501
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 370, 646
ErhI CCWWGG 2 cut(s) 370, 646
FaeI CATG 4 cut(s) 205, 374, 550, 650
FalI AAGNNNNNCTT 2 cut(s) 559, 591
FaqI GGGAC 2 cut(s) 286, 667
FatI CATG 4 cut(s) 201, 370, 546, 646
Fnu4HI GCNGC 5 cut(s) 33, 147, 411, 446, 556
FokI GGATG 1 cut(s) 299
Fsp4HI GCNGC 5 cut(s) 33, 147, 411, 446, 556
FspBI CTAG 1 cut(s) 688
GluI GCNGC 5 cut(s) 33, 147, 411, 446, 556
GsuI CTGGAG 1 cut(s) 316
HaeIII GGCC 1 cut(s) 397
HapII CCGG 1 cut(s) 333
Hin1II CATG 4 cut(s) 205, 374, 550, 650
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 4 cut(s) 62, 181, 307, 517
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 1 cut(s) 333
HphI GGTGA 3 cut(s) 396, 592, 671
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 4 cut(s) 48, 91, 159, 522
Hpy188III TCNNGA 2 cut(s) 16, 311
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 3 cut(s) 18, 117, 613
HpyCH4III ACNGT 4 cut(s) 390, 530, 589, 665
HpyCH4V TGCA 3 cut(s) 149, 386, 558
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
Hsp92II CATG 4 cut(s) 205, 374, 550, 650
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 4 cut(s) 159, 169, 205, 642
LmnI GCTCC 1 cut(s) 552
LpnPI CCDG 9 cut(s) 65, 92, 261, 268, 280, 324, 346, 420, 432
Lsp1109I GCAGC 4 cut(s) 133, 422, 457, 542
MaeI CTAG 1 cut(s) 688
MaeIII GTNAC 2 cut(s) 178, 659
MalI GATC 4 cut(s) 161, 171, 207, 644
MboI GATC 4 cut(s) 159, 169, 205, 642
MboII GAAGA 3 cut(s) 471, 567, 598
MflI RGATCY 2 cut(s) 159, 642
MluCI AATT 4 cut(s) 84, 164, 501, 535
MlyI GAGTC 1 cut(s) 175
MnlI CCTC 5 cut(s) 254, 307, 507, 620, 641
MseI TTAA 1 cut(s) 114
MslI CAYNNNNRTG 1 cut(s) 375
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 2 cut(s) 80, 334
MvaI CCWGG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 419
NciI CCSGG 1 cut(s) 334
NcoI CCATGG 2 cut(s) 370, 646
NdeII GATC 4 cut(s) 159, 169, 205, 642
NlaIII CATG 4 cut(s) 205, 374, 550, 650
NlaIV GGNNCC 1 cut(s) 644
NmuCI GTSAC 2 cut(s) 178, 659
PfeI GAWTC 3 cut(s) 62, 307, 517
PkrI GCNGC 5 cut(s) 34, 148, 412, 447, 557
PleI GAGTC 1 cut(s) 175
PpsI GAGTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 644
PspPI GGNCC 1 cut(s) 395
PsuI RGATCY 2 cut(s) 159, 642
RsaI GTAC 2 cut(s) 293, 365
RsaNI GTAC 2 cut(s) 292, 364
RseI CAYNNNNRTG 1 cut(s) 375
SaqAI TTAA 1 cut(s) 114
SatI GCNGC 5 cut(s) 33, 147, 411, 446, 556
Sau3AI GATC 4 cut(s) 159, 169, 205, 642
Sau96I GGNCC 1 cut(s) 395
ScaI AGTACT 1 cut(s) 293
SchI GAGTC 1 cut(s) 175
ScrFI CCNGG 2 cut(s) 80, 334
SetI ASST 4 cut(s) 415, 557, 572, 605
SfcI CTRYAG 2 cut(s) 256, 588
SmiMI CAYNNNNRTG 1 cut(s) 375
Sse9I AATT 4 cut(s) 84, 164, 501, 535
SsiI CCGC 1 cut(s) 32
SspMI CTAG 1 cut(s) 688
StyD4I CCNGG 2 cut(s) 78, 332
StyI CCWWGG 2 cut(s) 370, 646
TaaI ACNGT 4 cut(s) 390, 530, 589, 665
TaqI TCGA 2 cut(s) 191, 488
TasI AATT 4 cut(s) 84, 164, 501, 535
TatI WGTACW 1 cut(s) 291
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 3 cut(s) 62, 307, 517
Tru1I TTAA 1 cut(s) 114
Tru9I TTAA 1 cut(s) 114
TscAI CASTG 1 cut(s) 393
TseFI GTSAC 2 cut(s) 178, 659
TseI GCWGC 4 cut(s) 146, 410, 445, 555
Tsp45I GTSAC 2 cut(s) 178, 659
TspDTI ATGAA 5 cut(s) 190, 320, 535, 584, 597
TspRI CASTG 1 cut(s) 393
XapI RAATTY 3 cut(s) 84, 501, 535
XcmI CCANNNNNNNNNTGG 2 cut(s) 374, 653
XspI CTAG 1 cut(s) 688
ZrmI AGTACT 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.