Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019419

Physical Location & Seq

Genomic Coordinates Reverse (-)

63889509 .. 63892591

Gene Structure 3083 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33563

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCAGATTTGTGTGATTAGGCTATCCATTCTGGCTATGATTTTCTGTCAGAGAGTTCTGACTTCGCTCAACTTTGTGAAGATAAGGGTCTTACCTTTATTGGGCCTCCACATGTGTGATAAAAGGCAGTTGGTTATCACTGGCACAGTGGAGTTTATAGTCGATACAGTCTCAGGCCAATTTTATTTCATCGAGATGAATACCCGTCTTCAGGTTGAGCATCCTGGTAAAACTGAAGGATTGCTTGACAAAGTTTCAGGCATATCTCATTGTAGAGTTTCAGTTTACTTTTTACAGGTTTGGTATCCATCTCTGAGTGTTGACCATTTAAAGCAGGGTGATTTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004485 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005840 GO:0006082 GO:0006520 GO:0006551 GO:0006552 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009507 GO:0009536 GO:0009987 GO:0016054 GO:0016421 GO:0016874 GO:0016885 GO:0019752 GO:0022626 GO:0031974 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046395 GO:0046872 GO:0046914 GO:0050897 GO:0070013 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00280 ko01100 map00280 map01100

Pfam Domains

Protein Families

Biotin_carb_C Biotin_carb_N Biotin_lipoyl CPSase_L_D2

Protein Analysis

116

Amino Acids

13.29

Weight (kDa)

8.43

Isoelectric Point (pI)

18.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_L_D2	PF02786	37 - 75	1.7e-09	Carbamoyl-phosphate synthase L chain, ATP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019419)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0059021
rosa_roxburghii	Rroxscaffold_2G00125540
rosa_samantha	Rh4DG203500 Rh5BG554100 Rh5BG554200 Rh5CG577100
rosa_wichuraiana	Rw4G017470 Rw5G003620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	2 cut(s)	194, 255
AfiI	CCNNNNNNNGG	2 cut(s)	101, 211
AflIII	ACRYGT	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	223
AleI	CACNNNNGTG	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	175
AoxI	GGCC	2 cut(s)	103, 175
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	200
BccI	CCATC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	175
BfuI	GTATCC	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 211
Bse1I	ACTGG	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	225
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	2 cut(s)	101, 211
BseMII	CTCAG	2 cut(s)	186, 305
BseNI	ACTGG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	105, 177
BslI	CCNNNNNNNGG	2 cut(s)	101, 211
BsmAI	GTCTC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	105, 177
BspANI	GGCC	2 cut(s)	105, 177
BspCNI	CTCAG	2 cut(s)	185, 306
BsrI	ACTGG	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	148, 169
BstDEI	CTNAG	2 cut(s)	172, 314
BstF5I	GGATG	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	200
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	2 cut(s)	105, 177
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	138, 153
Cfr13I	GGNCC	1 cut(s)	103
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	4 cut(s)	22, 35, 105, 177
CviKI_1	RGCY	4 cut(s)	22, 35, 105, 177
DdeI	CTNAG	2 cut(s)	172, 314
DraI	TTTAAA	1 cut(s)	330
Eco57I	CTGAAG	2 cut(s)	194, 255
EcoRII	CCWGG	1 cut(s)	223
FaeI	CATG	1 cut(s)	115
FaiI	YATR	4 cut(s)	38, 113, 158, 263
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FatI	CATG	1 cut(s)	111
FokI	GGATG	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	105, 177
Hin1II	CATG	1 cut(s)	115
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	2 cut(s)	286, 322
Hpy188I	TCNGA	3 cut(s)	51, 60, 315
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	2 cut(s)	286, 322
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	2 cut(s)	148, 169
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	172, 314
Hsp92II	CATG	1 cut(s)	115
LpnPI	CCDG	9 cut(s)	17, 126, 159, 197, 210, 237, 243, 281, 320
LweI	GCATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	91, 200
MluCI	AATT	1 cut(s)	179
MnlI	CCTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	2 cut(s)	114, 194
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
NlaIII	CATG	1 cut(s)	115
NspI	RCATGY	1 cut(s)	115
OliI	CACNNNNGTG	1 cut(s)	114
PciI	ACATGT	1 cut(s)	111
PscI	ACATGT	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	103
RseI	CAYNNNNRTG	2 cut(s)	114, 194
SaqAI	TTAA	1 cut(s)	329
Sau96I	GGNCC	1 cut(s)	103
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	3 cut(s)	97, 216, 300
SfaNI	GCATC	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	114, 194
Sse9I	AATT	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	223
TaaI	ACNGT	2 cut(s)	148, 169
TaqI	TCGA	2 cut(s)	162, 192
TasI	AATT	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	2 cut(s)	145, 153
TspDTI	ATGAA	2 cut(s)	178, 212
TspRI	CASTG	2 cut(s)	145, 153
XceI	RCATGY	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.