Rh5CG577100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0019419
Physical Location & Seq
Reverse (-)
81735729 .. 81743163
7435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG577100.1

Sequence Viewer

Length: 741 bp
ATGGGGTACCTTCATAAGGGTTTAGTGCACTTTAGGGGATTTCAGGCTCACATGCTCACAGAAGTTCCAGAATACACAAAGCATATGGAAGCCCTGATCACTTGTCATTTGCACATACAGACATACTTGGAGAAACATCAAGTTCAATGGTTCGGTTCATGTTCAAAGGTGGAATCACATCATGTTGGTGCTCGTGTCATATGCTCACCCACCCAAAAATATTTGATTGTCAGCAAGGAGAAGATTCAAGAAGCTGTGGAAGCTAACTATATTCTTCTTCAGTTCTGGGTAAGTTCTTTATTTATCAAAGAGGTTAATTTGGATCTAGGGTCTAGATTGGAAAAGACAAGGAATAGAGAGGAAGCCAAAAATAAGATAAAAGAAAACTTTGGACTTGTGTGGAGATTAGAGAAAGGCCAAGGAGTTGAGTCAATTTTGCTGTACTTGCCGATTACCTCTGAGTTCGTCACATCAAGGTTGAGCATCCTGGTAAAACTGAAGGATTGCTTGACAAAGTTTCAGGCATATCTCATTGTAGAGTTTCAGGTTTGGTATCCATCTCTGAGTGTTGACCATTTAAAGCAGGGTGATGTAGGTACGCATGCTTTAAGTGATGATAACAGTGTGTATGCAGCCAAGGCTCAGAAGCTAGATGACATATCTCTAGCTATTAAGATCCAGCTTAGGTCAATAGAACAATTATGGAAGCAAGTTCACTATGCACTGGCTTCACAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

246

Amino Acids

28.38

Weight (kDa)

8.73

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0059021
rosa_roxburghii Rroxscaffold_2G00125540
rosa_samantha Rh4DG203500 Rh5BG554100 Rh5BG554200 Rh5CG577100
rosa_wichuraiana Rw4G017470 Rw5G003620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 6
AccB1I GGYRCC 1 cut(s) 6
AclWI GGATC 2 cut(s) 330, 670
AcuI CTGAAG 2 cut(s) 263, 518
AfaI GTAC 3 cut(s) 8, 443, 598
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 3 cut(s) 146, 165, 248
AjnI CCWGG 1 cut(s) 486
AluBI AGCT 5 cut(s) 254, 263, 649, 668, 682
AluI AGCT 5 cut(s) 254, 263, 649, 668, 682
Alw21I GWGCWC 2 cut(s) 30, 193
Alw44I GTGCAC 1 cut(s) 26
AlwI GGATC 2 cut(s) 330, 670
AoxI GGCC 1 cut(s) 415
ApaLI GTGCAC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 632
Asp718I GGTACC 1 cut(s) 6
AsuHPI GGTGA 2 cut(s) 198, 599
BaeGI GKGCMC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 6
BauI CACGAG 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 30, 193
BbvI GCAGC 1 cut(s) 644
BccI CCATC 1 cut(s) 565
BciT130I CCWGG 1 cut(s) 488
BciVI GTATCC 1 cut(s) 564
BclI TGATCA 1 cut(s) 96
BfaI CTAG 4 cut(s) 326, 333, 650, 665
BfuI GTATCC 1 cut(s) 564
BisI GCNGC 1 cut(s) 633
BlsI GCNGC 1 cut(s) 634
Bme1390I CCNGG 1 cut(s) 488
BmiI GGNNCC 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 488
BmsI GCATC 1 cut(s) 492
Bpu10I CCTNAGC 1 cut(s) 683
BsaJI CCNNGG 2 cut(s) 418, 636
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 729
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 2 cut(s) 418, 636
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 3 cut(s) 450, 554, 656
BseNI ACTGG 1 cut(s) 729
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 1 cut(s) 644
BshFI GGCC 1 cut(s) 417
BshNI GGYRCC 1 cut(s) 6
BsiHKAI GWGCWC 2 cut(s) 30, 193
BslI CCNNNNNNNGG 1 cut(s) 16
BsnI GGCC 1 cut(s) 417
Bsp1286I GDGCHC 2 cut(s) 30, 193
Bsp143I GATC 3 cut(s) 96, 322, 675
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 3 cut(s) 451, 555, 655
BspLI GGNNCC 1 cut(s) 8
BspPI GGATC 2 cut(s) 330, 670
BspT107I GGYRCC 1 cut(s) 6
BsrI ACTGG 1 cut(s) 729
BssECI CCNNGG 2 cut(s) 418, 636
BssMI GATC 3 cut(s) 96, 322, 675
BssSI CACGAG 1 cut(s) 192
BssT1I CCWWGG 2 cut(s) 418, 636
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 1 cut(s) 623
BstC8I GCNNGC 1 cut(s) 603
BstDEI CTNAG 4 cut(s) 459, 563, 642, 683
BstENI CCTNNNNNAGG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 483
BstKTI GATC 3 cut(s) 99, 325, 678
BstMBI GATC 3 cut(s) 96, 322, 675
BstMWI GCNNNNNNNGC 3 cut(s) 260, 445, 638
BstNI CCWGG 1 cut(s) 488
BstNSI RCATGY 2 cut(s) 55, 605
BstSCI CCNGG 1 cut(s) 486
BstSLI GKGCMC 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 644
BstX2I RGATCY 2 cut(s) 322, 675
BstYI RGATCY 2 cut(s) 322, 675
BsuI GTATCC 1 cut(s) 564
BsuRI GGCC 1 cut(s) 417
BtsCI GGATG 1 cut(s) 483
BtsIMutI CAGTG 2 cut(s) 628, 722
Cac8I GCNNGC 1 cut(s) 603
Csp6I GTAC 3 cut(s) 7, 442, 597
CviAII CATG 4 cut(s) 52, 159, 182, 602
CviQI GTAC 3 cut(s) 7, 442, 597
DdeI CTNAG 4 cut(s) 459, 563, 642, 683
DpnI GATC 3 cut(s) 98, 324, 677
DpnII GATC 3 cut(s) 96, 322, 675
DraI TTTAAA 1 cut(s) 579
Eco130I CCWWGG 2 cut(s) 418, 636
Eco57I CTGAAG 2 cut(s) 263, 518
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoRII CCWGG 1 cut(s) 486
EcoT14I CCWWGG 2 cut(s) 418, 636
ErhI CCWWGG 2 cut(s) 418, 636
FaeI CATG 4 cut(s) 55, 162, 185, 605
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FatI CATG 4 cut(s) 51, 158, 181, 601
FauNDI CATATG 2 cut(s) 84, 200
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 633
FokI GGATG 1 cut(s) 470
Fsp4HI GCNGC 1 cut(s) 633
FspBI CTAG 4 cut(s) 326, 333, 650, 665
GluI GCNGC 1 cut(s) 633
HaeIII GGCC 1 cut(s) 417
Hin1II CATG 4 cut(s) 55, 162, 185, 605
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 3 cut(s) 173, 244, 428
HphI GGTGA 2 cut(s) 198, 599
Hpy166II GTNNAC 3 cut(s) 28, 571, 715
Hpy188I TCNGA 3 cut(s) 460, 564, 645
Hpy188III TCNNGA 3 cut(s) 68, 248, 333
Hpy8I GTNNAC 3 cut(s) 28, 571, 715
HpyAV CCTTC 2 cut(s) 20, 493
HpyCH4III ACNGT 1 cut(s) 623
HpyCH4V TGCA 4 cut(s) 28, 112, 632, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 445, 638
HpyF3I CTNAG 4 cut(s) 459, 563, 642, 683
Hsp92II CATG 4 cut(s) 55, 162, 185, 605
KpnI GGTACC 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 3 cut(s) 96, 322, 675
Lsp1109I GCAGC 1 cut(s) 644
LweI GCATC 1 cut(s) 492
MaeI CTAG 4 cut(s) 326, 333, 650, 665
MaeIII GTNAC 1 cut(s) 466
MalI GATC 3 cut(s) 98, 324, 677
MboI GATC 3 cut(s) 96, 322, 675
MboII GAAGA 3 cut(s) 253, 266, 269
MflI RGATCY 2 cut(s) 322, 675
MhlI GDGCHC 2 cut(s) 30, 193
MluCI AATT 3 cut(s) 316, 432, 698
MlyI GAGTC 1 cut(s) 437
MnlI CCTC 3 cut(s) 304, 352, 466
MseI TTAA 4 cut(s) 315, 578, 608, 672
MslI CAYNNNNRTG 2 cut(s) 186, 736
MspR9I CCNGG 1 cut(s) 488
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 3 cut(s) 260, 445, 638
NdeI CATATG 2 cut(s) 84, 200
NdeII GATC 3 cut(s) 96, 322, 675
NlaIII CATG 4 cut(s) 55, 162, 185, 605
NlaIV GGNNCC 1 cut(s) 8
NmuCI GTSAC 1 cut(s) 466
NspI RCATGY 2 cut(s) 55, 605
PaeI GCATGC 1 cut(s) 605
PfeI GAWTC 2 cut(s) 173, 244
PkrI GCNGC 1 cut(s) 634
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 1 cut(s) 8
PsuI RGATCY 2 cut(s) 322, 675
RsaI GTAC 3 cut(s) 8, 443, 598
RsaNI GTAC 3 cut(s) 7, 442, 597
RseI CAYNNNNRTG 2 cut(s) 186, 736
SaqAI TTAA 4 cut(s) 315, 578, 608, 672
SatI GCNGC 1 cut(s) 633
Sau3AI GATC 3 cut(s) 96, 322, 675
SchI GAGTC 1 cut(s) 437
ScrFI CCNGG 1 cut(s) 488
SduI GDGCHC 2 cut(s) 30, 193
SfaNI GCATC 1 cut(s) 492
SmiMI CAYNNNNRTG 2 cut(s) 186, 736
SphI GCATGC 1 cut(s) 605
Sse9I AATT 3 cut(s) 316, 432, 698
SspI AATATT 1 cut(s) 221
SspMI CTAG 4 cut(s) 326, 333, 650, 665
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 2 cut(s) 418, 636
TaaI ACNGT 1 cut(s) 623
TasI AATT 3 cut(s) 316, 432, 698
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 2 cut(s) 173, 244
Tru1I TTAA 4 cut(s) 315, 578, 608, 672
Tru9I TTAA 4 cut(s) 315, 578, 608, 672
TscAI CASTG 2 cut(s) 628, 729
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 1 cut(s) 632
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 2 cut(s) 628, 729
VneI GTGCAC 1 cut(s) 26
XagI CCTNNNNNAGG 1 cut(s) 14
XbaI TCTAGA 1 cut(s) 332
XceI RCATGY 2 cut(s) 55, 605
XspI CTAG 4 cut(s) 326, 333, 650, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.