Rh5BG554200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0019419
Physical Location & Seq
Reverse (-)
88035706 .. 88041846
6141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG554200.1

Sequence Viewer

Length: 419 bp
ATGGCGGCAGGATTGTTCTATTATGCCCAGACCGTGGAGACGCCTACAGCGGTCCAAACCAGCTTTCAAACCTCAGACCTTTGGGTTCGATCCTCTTTCTCCCGTCGACAATCCTTTCATGACCTGAGAGTACATCTCTCTCCAGTGGAATCCATGCCTTGGAGAATATATGGGGTTTCTAAGTACCTTCATAAGGGTTTAGTGCACTTTAGGGGATTTCAGGCTCACATGCTCACAGAAGTTCCAGAATACACAAAGCATATGGAAGCCCTGATCACTTGTCATTTGCACATACAGACATACTTGTTGAATCTTGTAGGAGAAACATCAAGTTCAATGGTTCGGTTCATGTTCAAAGGTGGAATCACATCATGTTGGTGCTCGTGTCATATGCTCACCCACCCAAAAATATTTGATTG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.09

Weight (kDa)

8.75

Isoelectric Point (pI)

58.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019419)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0059021
rosa_roxburghii Rroxscaffold_2G00125540
rosa_samantha Rh4DG203500 Rh5BG554100 Rh5BG554200 Rh5CG577100
rosa_wichuraiana Rw4G017470 Rw5G003620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 34, 159
AccI GTMKAC 1 cut(s) 106
AciI CCGC 2 cut(s) 5, 50
AclWI GGATC 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 2 cut(s) 132, 185
AfiI CCNNNNNNNGG 3 cut(s) 34, 159, 193
AgsI TTSAA 4 cut(s) 68, 310, 336, 355
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
Alw21I GWGCWC 2 cut(s) 207, 383
Alw26I GTCTC 1 cut(s) 32
Alw44I GTGCAC 1 cut(s) 203
AlwI GGATC 1 cut(s) 84
ApaLI GTGCAC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 388
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 207
BauI CACGAG 1 cut(s) 382
Bbv12I GWGCWC 2 cut(s) 207, 383
BclI TGATCA 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 45
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BpmI CTGGAG 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 2 cut(s) 33, 158
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 159, 193
Bse1I ACTGG 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 33, 158
BseLI CCNNNNNNNGG 3 cut(s) 34, 159, 193
BseMII CTCAG 2 cut(s) 87, 116
BseNI ACTGG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 207
BsiHKAI GWGCWC 2 cut(s) 207, 383
BslI CCNNNNNNNGG 3 cut(s) 34, 159, 193
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
Bsp1286I GDGCHC 2 cut(s) 207, 383
Bsp143I GATC 2 cut(s) 89, 273
BspACI CCGC 2 cut(s) 5, 50
BspCNI CTCAG 2 cut(s) 86, 117
BspHI TCATGA 1 cut(s) 118
BspPI GGATC 1 cut(s) 84
BsrI ACTGG 1 cut(s) 143
BssECI CCNNGG 2 cut(s) 33, 158
BssMI GATC 2 cut(s) 89, 273
BssNI GRCGYC 1 cut(s) 41
BssSI CACGAG 1 cut(s) 382
BssT1I CCWWGG 1 cut(s) 158
Bst2BI CACGAG 1 cut(s) 382
Bst4CI ACNGT 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 41
BstDEI CTNAG 3 cut(s) 73, 125, 180
BstDSI CCRYGG 1 cut(s) 33
BstENI CCTNNNNNAGG 1 cut(s) 191
BstKTI GATC 2 cut(s) 92, 276
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 2 cut(s) 89, 273
BstNSI RCATGY 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 45
BstSLI GKGCMC 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 150
CciI TCATGA 1 cut(s) 118
Cfr13I GGNCC 1 cut(s) 52
CseI GACGC 1 cut(s) 49
Csp6I GTAC 2 cut(s) 131, 184
CviAII CATG 5 cut(s) 119, 154, 229, 349, 372
CviJI RGCY 3 cut(s) 63, 224, 269
CviKI_1 RGCY 3 cut(s) 63, 224, 269
CviQI GTAC 2 cut(s) 131, 184
DdeI CTNAG 3 cut(s) 73, 125, 180
DpnI GATC 2 cut(s) 91, 275
DpnII GATC 2 cut(s) 89, 273
Eco130I CCWWGG 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 52
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 158
ErhI CCWWGG 1 cut(s) 158
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 5 cut(s) 122, 157, 232, 352, 375
FatI CATG 5 cut(s) 118, 153, 228, 348, 371
FauNDI CATATG 2 cut(s) 261, 390
FbaI TGATCA 1 cut(s) 273
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 126
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 5 cut(s) 122, 157, 232, 352, 375
HincII GTYRAC 1 cut(s) 107
HindII GTYRAC 1 cut(s) 107
HinfI GANTC 3 cut(s) 149, 310, 363
HphI GGTGA 1 cut(s) 388
Hpy166II GTNNAC 2 cut(s) 107, 205
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 119, 245
Hpy8I GTNNAC 2 cut(s) 107, 205
Hpy99I CGWCG 1 cut(s) 108
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 2 cut(s) 205, 289
HpyF3I CTNAG 3 cut(s) 73, 125, 180
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 5 cut(s) 122, 157, 232, 352, 375
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 2 cut(s) 89, 273
LpnPI CCDG 7 cut(s) 41, 73, 137, 156, 206, 258, 284
MalI GATC 2 cut(s) 91, 275
MboI GATC 2 cut(s) 89, 273
MhlI GDGCHC 2 cut(s) 207, 383
MnlI CCTC 2 cut(s) 82, 103
MslI CAYNNNNRTG 1 cut(s) 376
MspA1I CMGCKG 1 cut(s) 50
NdeI CATATG 2 cut(s) 261, 390
NdeII GATC 2 cut(s) 89, 273
NlaIII CATG 5 cut(s) 122, 157, 232, 352, 375
NspI RCATGY 1 cut(s) 232
PagI TCATGA 1 cut(s) 118
PfeI GAWTC 3 cut(s) 149, 310, 363
PflMI CCANNNNNTGG 2 cut(s) 34, 159
PkrI GCNGC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 52
RsaI GTAC 2 cut(s) 132, 185
RsaNI GTAC 2 cut(s) 131, 184
RseI CAYNNNNRTG 1 cut(s) 376
SalI GTCGAC 1 cut(s) 105
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 89, 273
Sau96I GGNCC 1 cut(s) 52
SduI GDGCHC 2 cut(s) 207, 383
SetI ASST 6 cut(s) 65, 74, 81, 126, 189, 361
SfcI CTRYAG 1 cut(s) 45
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 376
SsiI CCGC 2 cut(s) 5, 50
SspI AATATT 1 cut(s) 411
StyI CCWWGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 34
TaqI TCGA 2 cut(s) 88, 106
TatI WGTACW 1 cut(s) 130
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 149, 310, 363
TscAI CASTG 1 cut(s) 150
TspDTI ATGAA 3 cut(s) 107, 179, 337
TspRI CASTG 1 cut(s) 150
Van91I CCANNNNNTGG 2 cut(s) 34, 159
VneI GTGCAC 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 52
XagI CCTNNNNNAGG 1 cut(s) 191
XceI RCATGY 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.