PAN-like domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0066621 RchiOBHm_Chr5g0066651 RchiOBHm_Chr5g0074131 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 561 |
| AciI | CCGC | 1 cut(s) | 485 |
| AclWI | GGATC | 2 cut(s) | 155, 282 |
| AcoI | YGGCCR | 1 cut(s) | 516 |
| AcsI | RAATTY | 2 cut(s) | 128, 321 |
| AfaI | GTAC | 3 cut(s) | 104, 231, 581 |
| AflIII | ACRYGT | 1 cut(s) | 491 |
| AgsI | TTSAA | 5 cut(s) | 32, 203, 259, 335, 424 |
| AjnI | CCWGG | 1 cut(s) | 54 |
| AluBI | AGCT | 4 cut(s) | 28, 52, 284, 548 |
| AluI | AGCT | 4 cut(s) | 28, 52, 284, 548 |
| Alw26I | GTCTC | 1 cut(s) | 500 |
| AlwI | GGATC | 2 cut(s) | 155, 282 |
| AoxI | GGCC | 1 cut(s) | 516 |
| ApoI | RAATTY | 2 cut(s) | 128, 321 |
| BalI | TGGCCA | 1 cut(s) | 518 |
| BccI | CCATC | 3 cut(s) | 172, 296, 595 |
| BciT130I | CCWGG | 1 cut(s) | 56 |
| BcoDI | GTCTC | 1 cut(s) | 500 |
| BfaI | CTAG | 1 cut(s) | 285 |
| Bme1390I | CCNGG | 1 cut(s) | 56 |
| BmrFI | CCNGG | 1 cut(s) | 56 |
| BpmI | CTGGAG | 1 cut(s) | 235 |
| BpuEI | CTTGAG | 1 cut(s) | 207 |
| BsaBI | GATNNNNATC | 1 cut(s) | 423 |
| BsaJI | CCNNGG | 1 cut(s) | 55 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 233, 263 |
| Bse8I | GATNNNNATC | 1 cut(s) | 423 |
| BseBI | CCWGG | 1 cut(s) | 56 |
| BseDI | CCNNGG | 1 cut(s) | 55 |
| BseGI | GGATG | 2 cut(s) | 237, 543 |
| BseJI | GATNNNNATC | 1 cut(s) | 423 |
| BseMII | CTCAG | 1 cut(s) | 518 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| BshFI | GGCC | 1 cut(s) | 518 |
| BsmAI | GTCTC | 1 cut(s) | 500 |
| BsnI | GGCC | 1 cut(s) | 518 |
| Bsp143I | GATC | 3 cut(s) | 93, 160, 274 |
| BspACI | CCGC | 1 cut(s) | 485 |
| BspANI | GGCC | 1 cut(s) | 518 |
| BspCNI | CTCAG | 1 cut(s) | 519 |
| BspHI | TCATGA | 2 cut(s) | 438, 498 |
| BspPI | GGATC | 2 cut(s) | 155, 282 |
| BssECI | CCNNGG | 1 cut(s) | 55 |
| BssMI | GATC | 3 cut(s) | 93, 160, 274 |
| Bst2UI | CCWGG | 1 cut(s) | 56 |
| BstDEI | CTNAG | 1 cut(s) | 527 |
| BstF5I | GGATG | 2 cut(s) | 237, 543 |
| BstKTI | GATC | 3 cut(s) | 96, 163, 277 |
| BstMAI | GTCTC | 1 cut(s) | 500 |
| BstMBI | GATC | 3 cut(s) | 93, 160, 274 |
| BstNI | CCWGG | 1 cut(s) | 56 |
| BstNSI | RCATGY | 2 cut(s) | 109, 495 |
| BstSCI | CCNGG | 1 cut(s) | 54 |
| BstX2I | RGATCY | 2 cut(s) | 160, 274 |
| BstYI | RGATCY | 2 cut(s) | 160, 274 |
| BsuRI | GGCC | 1 cut(s) | 518 |
| BtsCI | GGATG | 2 cut(s) | 237, 543 |
| CciI | TCATGA | 2 cut(s) | 438, 498 |
| Csp6I | GTAC | 3 cut(s) | 103, 230, 580 |
| CviAII | CATG | 8 cut(s) | 106, 355, 416, 439, 479, 492, 499, 591 |
| CviJI | RGCY | 6 cut(s) | 23, 28, 52, 284, 518, 548 |
| CviKI_1 | RGCY | 6 cut(s) | 23, 28, 52, 284, 518, 548 |
| CviQI | GTAC | 3 cut(s) | 103, 230, 580 |
| DdeI | CTNAG | 1 cut(s) | 527 |
| DpnI | GATC | 3 cut(s) | 95, 162, 276 |
| DpnII | GATC | 3 cut(s) | 93, 160, 274 |
| EaeI | YGGCCR | 1 cut(s) | 516 |
| EcoRII | CCWGG | 1 cut(s) | 54 |
| FaeI | CATG | 8 cut(s) | 109, 358, 419, 442, 482, 495, 502, 594 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 216, 248 |
| FatI | CATG | 8 cut(s) | 105, 354, 415, 438, 478, 491, 498, 590 |
| FokI | GGATG | 2 cut(s) | 224, 550 |
| FspBI | CTAG | 1 cut(s) | 285 |
| GsuI | CTGGAG | 1 cut(s) | 235 |
| HaeIII | GGCC | 1 cut(s) | 518 |
| Hin1II | CATG | 8 cut(s) | 109, 358, 419, 442, 482, 495, 502, 594 |
| HindIII | AAGCTT | 1 cut(s) | 26 |
| HinfI | GANTC | 3 cut(s) | 313, 358, 475 |
| Hpy166II | GTNNAC | 1 cut(s) | 194 |
| Hpy188I | TCNGA | 4 cut(s) | 160, 169, 328, 528 |
| Hpy188III | TCNNGA | 3 cut(s) | 252, 439, 499 |
| Hpy8I | GTNNAC | 1 cut(s) | 194 |
| HpyCH4IV | ACGT | 1 cut(s) | 510 |
| HpyCH4V | TGCA | 2 cut(s) | 71, 508 |
| HpyF3I | CTNAG | 1 cut(s) | 527 |
| HpySE526I | ACGT | 1 cut(s) | 510 |
| Hsp92II | CATG | 8 cut(s) | 109, 358, 419, 442, 482, 495, 502, 594 |
| Kzo9I | GATC | 3 cut(s) | 93, 160, 274 |
| LmnI | GCTCC | 1 cut(s) | 57 |
| LpnPI | CCDG | 3 cut(s) | 41, 68, 265 |
| MaeI | CTAG | 1 cut(s) | 285 |
| MaeII | ACGT | 1 cut(s) | 510 |
| MaeIII | GTNAC | 1 cut(s) | 487 |
| MalI | GATC | 3 cut(s) | 95, 162, 276 |
| MboI | GATC | 3 cut(s) | 93, 160, 274 |
| MboII | GAAGA | 1 cut(s) | 132 |
| MflI | RGATCY | 2 cut(s) | 160, 274 |
| MlsI | TGGCCA | 1 cut(s) | 518 |
| MluCI | AATT | 4 cut(s) | 80, 128, 321, 532 |
| MluNI | TGGCCA | 1 cut(s) | 518 |
| MmeI | TCCRAC | 3 cut(s) | 351, 370, 532 |
| MnlI | CCTC | 3 cut(s) | 67, 70, 205 |
| Mox20I | TGGCCA | 1 cut(s) | 518 |
| MscI | TGGCCA | 1 cut(s) | 518 |
| MseI | TTAA | 2 cut(s) | 11, 48 |
| MslI | CAYNNNNRTG | 1 cut(s) | 503 |
| Msp20I | TGGCCA | 1 cut(s) | 518 |
| MspA1I | CMGCKG | 1 cut(s) | 548 |
| MspR9I | CCNGG | 1 cut(s) | 56 |
| MvaI | CCWGG | 1 cut(s) | 56 |
| NdeII | GATC | 3 cut(s) | 93, 160, 274 |
| NlaIII | CATG | 8 cut(s) | 109, 358, 419, 442, 482, 495, 502, 594 |
| NspI | RCATGY | 2 cut(s) | 109, 495 |
| PagI | TCATGA | 2 cut(s) | 438, 498 |
| PciI | ACATGT | 1 cut(s) | 491 |
| PfeI | GAWTC | 3 cut(s) | 313, 358, 475 |
| PscI | ACATGT | 1 cut(s) | 491 |
| PsiI | TTATAA | 1 cut(s) | 561 |
| Psp6I | CCWGG | 1 cut(s) | 54 |
| PspGI | CCWGG | 1 cut(s) | 54 |
| PsuI | RGATCY | 2 cut(s) | 160, 274 |
| PvuII | CAGCTG | 1 cut(s) | 548 |
| RsaI | GTAC | 3 cut(s) | 104, 231, 581 |
| RsaNI | GTAC | 3 cut(s) | 103, 230, 580 |
| RseI | CAYNNNNRTG | 1 cut(s) | 503 |
| SaqAI | TTAA | 2 cut(s) | 11, 48 |
| Sau3AI | GATC | 3 cut(s) | 93, 160, 274 |
| ScrFI | CCNGG | 1 cut(s) | 56 |
| SetI | ASST | 5 cut(s) | 30, 54, 286, 513, 550 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 503 |
| SmlI | CTYRAG | 1 cut(s) | 222 |
| SmoI | CTYRAG | 1 cut(s) | 222 |
| Sse9I | AATT | 4 cut(s) | 80, 128, 321, 532 |
| SsiI | CCGC | 1 cut(s) | 485 |
| SspI | AATATT | 1 cut(s) | 453 |
| SspMI | CTAG | 1 cut(s) | 285 |
| StyD4I | CCNGG | 1 cut(s) | 54 |
| TaiI | ACGT | 1 cut(s) | 513 |
| TaqI | TCGA | 2 cut(s) | 115, 351 |
| TasI | AATT | 4 cut(s) | 80, 128, 321, 532 |
| TatI | WGTACW | 1 cut(s) | 102 |
| TfiI | GAWTC | 3 cut(s) | 313, 358, 475 |
| Tru1I | TTAA | 2 cut(s) | 11, 48 |
| Tru9I | TTAA | 2 cut(s) | 11, 48 |
| TspDTI | ATGAA | 8 cut(s) | 17, 125, 132, 257, 326, 371, 455, 467 |
| XapI | RAATTY | 2 cut(s) | 128, 321 |
| XceI | RCATGY | 2 cut(s) | 109, 495 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 118 |
| XspI | CTAG | 1 cut(s) | 285 |