PAN-like domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0066621 RchiOBHm_Chr5g0066651 RchiOBHm_Chr5g0074131 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclI | AACGTT | 1 cut(s) | 160 |
| AclWI | GGATC | 2 cut(s) | 119, 246 |
| AcsI | RAATTY | 1 cut(s) | 285 |
| AfaI | GTAC | 1 cut(s) | 212 |
| AgsI | TTSAA | 6 cut(s) | 32, 71, 167, 223, 299, 316 |
| AluBI | AGCT | 2 cut(s) | 28, 248 |
| AluI | AGCT | 2 cut(s) | 28, 248 |
| AlwI | GGATC | 2 cut(s) | 119, 246 |
| ApoI | RAATTY | 1 cut(s) | 285 |
| BccI | CCATC | 2 cut(s) | 136, 260 |
| BclI | TGATCA | 1 cut(s) | 97 |
| BfaI | CTAG | 1 cut(s) | 249 |
| BglII | AGATCT | 1 cut(s) | 225 |
| BmcAI | AGTACT | 1 cut(s) | 212 |
| BpmI | CTGGAG | 1 cut(s) | 199 |
| BpuEI | CTTGAG | 2 cut(s) | 76, 171 |
| BsaBI | GATNNNNATC | 1 cut(s) | 89 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 145, 175, 197, 227 |
| Bse3DI | GCAATG | 1 cut(s) | 312 |
| Bse8I | GATNNNNATC | 1 cut(s) | 89 |
| BseJI | GATNNNNATC | 1 cut(s) | 89 |
| BseMI | GCAATG | 1 cut(s) | 312 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| Bsp143I | GATC | 5 cut(s) | 90, 97, 124, 225, 238 |
| BspPI | GGATC | 2 cut(s) | 119, 246 |
| BsrDI | GCAATG | 1 cut(s) | 312 |
| BssMI | GATC | 5 cut(s) | 90, 97, 124, 225, 238 |
| Bst6I | CTCTTC | 1 cut(s) | 66 |
| BstDEI | CTNAG | 2 cut(s) | 47, 172 |
| BstKTI | GATC | 5 cut(s) | 93, 100, 127, 228, 241 |
| BstMBI | GATC | 5 cut(s) | 90, 97, 124, 225, 238 |
| BstX2I | RGATCY | 3 cut(s) | 124, 225, 238 |
| BstYI | RGATCY | 3 cut(s) | 124, 225, 238 |
| Csp6I | GTAC | 1 cut(s) | 211 |
| CviAII | CATG | 1 cut(s) | 319 |
| CviJI | RGCY | 4 cut(s) | 23, 28, 52, 248 |
| CviKI_1 | RGCY | 4 cut(s) | 23, 28, 52, 248 |
| CviQI | GTAC | 1 cut(s) | 211 |
| DdeI | CTNAG | 2 cut(s) | 47, 172 |
| DpnI | GATC | 5 cut(s) | 92, 99, 126, 227, 240 |
| DpnII | GATC | 5 cut(s) | 90, 97, 124, 225, 238 |
| Eam1104I | CTCTTC | 1 cut(s) | 66 |
| EarI | CTCTTC | 1 cut(s) | 66 |
| FaeI | CATG | 1 cut(s) | 322 |
| FaiI | YATR | 7 cut(s) | 20, 36, 96, 140, 201, 234, 320 |
| FatI | CATG | 1 cut(s) | 318 |
| FbaI | TGATCA | 1 cut(s) | 97 |
| FspBI | CTAG | 1 cut(s) | 249 |
| GsuI | CTGGAG | 1 cut(s) | 199 |
| Hin1II | CATG | 1 cut(s) | 322 |
| HindIII | AAGCTT | 1 cut(s) | 26 |
| HinfI | GANTC | 2 cut(s) | 277, 322 |
| Hpy166II | GTNNAC | 1 cut(s) | 158 |
| Hpy188I | TCNGA | 3 cut(s) | 124, 133, 265 |
| Hpy188III | TCNNGA | 2 cut(s) | 55, 216 |
| Hpy8I | GTNNAC | 1 cut(s) | 158 |
| HpyCH4IV | ACGT | 2 cut(s) | 160, 359 |
| HpyF3I | CTNAG | 2 cut(s) | 47, 172 |
| HpySE526I | ACGT | 2 cut(s) | 160, 359 |
| Hsp92II | CATG | 1 cut(s) | 322 |
| Ksp22I | TGATCA | 1 cut(s) | 97 |
| Kzo9I | GATC | 5 cut(s) | 90, 97, 124, 225, 238 |
| LpnPI | CCDG | 2 cut(s) | 229, 331 |
| MaeI | CTAG | 1 cut(s) | 249 |
| MaeII | ACGT | 2 cut(s) | 160, 359 |
| MalI | GATC | 5 cut(s) | 92, 99, 126, 227, 240 |
| MboI | GATC | 5 cut(s) | 90, 97, 124, 225, 238 |
| MboII | GAAGA | 4 cut(s) | 35, 83, 96, 235 |
| MflI | RGATCY | 3 cut(s) | 124, 225, 238 |
| MluCI | AATT | 2 cut(s) | 80, 285 |
| MmeI | TCCRAC | 1 cut(s) | 334 |
| MnlI | CCTC | 3 cut(s) | 67, 70, 169 |
| MseI | TTAA | 1 cut(s) | 11 |
| NdeII | GATC | 5 cut(s) | 90, 97, 124, 225, 238 |
| NlaIII | CATG | 1 cut(s) | 322 |
| PfeI | GAWTC | 2 cut(s) | 277, 322 |
| Psp1406I | AACGTT | 1 cut(s) | 160 |
| PsuI | RGATCY | 3 cut(s) | 124, 225, 238 |
| RsaI | GTAC | 1 cut(s) | 212 |
| RsaNI | GTAC | 1 cut(s) | 211 |
| SaqAI | TTAA | 1 cut(s) | 11 |
| Sau3AI | GATC | 5 cut(s) | 90, 97, 124, 225, 238 |
| ScaI | AGTACT | 1 cut(s) | 212 |
| SetI | ASST | 4 cut(s) | 30, 163, 250, 362 |
| SgeI | CNNG | 8 cut(s) | 37, 67, 200, 220, 228, 261, 331, 358 |
| SmlI | CTYRAG | 2 cut(s) | 55, 186 |
| SmoI | CTYRAG | 2 cut(s) | 55, 186 |
| Sse9I | AATT | 2 cut(s) | 80, 285 |
| SspMI | CTAG | 1 cut(s) | 249 |
| TaiI | ACGT | 2 cut(s) | 163, 362 |
| TaqI | TCGA | 1 cut(s) | 291 |
| TasI | AATT | 2 cut(s) | 80, 285 |
| TatI | WGTACW | 1 cut(s) | 210 |
| TfiI | GAWTC | 2 cut(s) | 277, 322 |
| Tru1I | TTAA | 1 cut(s) | 11 |
| Tru9I | TTAA | 1 cut(s) | 11 |
| TspDTI | ATGAA | 5 cut(s) | 17, 96, 221, 290, 335 |
| XapI | RAATTY | 1 cut(s) | 285 |
| XspI | CTAG | 1 cut(s) | 249 |
| ZrmI | AGTACT | 1 cut(s) | 212 |