Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022762

Physical Location & Seq

Genomic Coordinates Reverse (-)

74103159 .. 74104534

Gene Structure 1376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34368

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGCAGGTTGTCAGAGTTCAAAACCTTCTCCATAGAGGGATTGGTGTCCATCATGCAGGACTTCTTCCAATTGTTAAGGAAGTCGTTGAAATGCTCTTTTGTCGCGGTGTGATAAAGGTTGTCTTTGATACATTAAGGAAATTTGATGGCAAGGAATTTAGACAACTACTACCAGGAGAATACACTAAAATGGCAGGCCGTGCTGGCAGGAGAGGACTTGATAAAATTGGTACAGTTATTGTAATGTGCCGTGATGAAATCCTAGAAGAGAGGGATTTGAAGCATGTCATAGTTGGAAGTGCAACCAGGCTAGAATCTCAGTTTCGGCTAACTTATATTATGATCATGCATCTTCTTCGTGTTGAAGAACTGAAGGTACCTATTTTCTTCATGTCAGTCCCATTCATACATATAGGGGAAAGGAAACAGGACCGCAGATCAATTTTGAATCCATTCCAAATTGAAGAAGCTAAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

159

Amino Acids

18.42

Weight (kDa)

9.74

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022762)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0068041
rosa_multiflora	Rmu_sc0000435.1_g000026
rosa_samantha	Rh5BG463900 Rh5CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	376
AccII	CGCG	1 cut(s)	105
AciI	CCGC	2 cut(s)	105, 433
AcsI	RAATTY	2 cut(s)	140, 155
AcuI	CTGAAG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	232, 378
AgsI	TTSAA	6 cut(s)	20, 89, 280, 365, 448, 464
AjnI	CCWGG	2 cut(s)	172, 305
AluBI	AGCT	1 cut(s)	470
AluI	AGCT	1 cut(s)	470
AoxI	GGCC	1 cut(s)	196
ApoI	RAATTY	2 cut(s)	140, 155
Asp700I	GAANNNNTTC	1 cut(s)	452
Asp718I	GGTACC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	376
BccI	CCATC	2 cut(s)	57, 140
BceAI	ACGGC	2 cut(s)	183, 234
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	2 cut(s)	174, 307
BclI	TGATCA	1 cut(s)	342
BfaI	CTAG	2 cut(s)	263, 311
BglI	GCCNNNNNGGC	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	174, 307
Bme18I	GGWCC	1 cut(s)	430
BmgT120I	GGNCC	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	2 cut(s)	174, 307
BmsI	GCATC	1 cut(s)	358
BseBI	CCWGG	2 cut(s)	174, 307
BseMII	CTCAG	1 cut(s)	332
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	198
BshNI	GGYRCC	1 cut(s)	376
BslFI	GGGAC	1 cut(s)	383
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	198
Bsp143I	GATC	2 cut(s)	342, 437
BspACI	CCGC	2 cut(s)	105, 433
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	378
BspT107I	GGYRCC	1 cut(s)	376
BssMI	GATC	2 cut(s)	342, 437
Bst2UI	CCWGG	2 cut(s)	174, 307
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	261
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	196, 205
BstDEI	CTNAG	1 cut(s)	318
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	2 cut(s)	345, 440
BstMBI	GATC	2 cut(s)	342, 437
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 204
BstNI	CCWGG	2 cut(s)	174, 307
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	2 cut(s)	172, 305
BstUI	CGCG	1 cut(s)	105
BsuRI	GGCC	1 cut(s)	198
Cac8I	GCNNGC	2 cut(s)	196, 205
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	2 cut(s)	231, 377
CviAII	CATG	4 cut(s)	53, 284, 346, 391
CviJI	RGCY	4 cut(s)	198, 310, 328, 470
CviKI_1	RGCY	4 cut(s)	198, 310, 328, 470
CviQI	GTAC	2 cut(s)	231, 377
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	2 cut(s)	344, 439
DpnII	GATC	2 cut(s)	342, 437
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	392
EcoRII	CCWGG	2 cut(s)	172, 305
EcoT22I	ATGCAT	1 cut(s)	351
FaeI	CATG	4 cut(s)	56, 287, 349, 394
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	4 cut(s)	52, 283, 345, 390
FbaI	TGATCA	1 cut(s)	342
FspBI	CTAG	2 cut(s)	263, 311
HaeIII	GGCC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	56, 287, 349, 394
HinfI	GANTC	2 cut(s)	314, 448
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	1 cut(s)	477
HpyAV	CCTTC	2 cut(s)	35, 367
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	4 cut(s)	4, 56, 302, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 204
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	4 cut(s)	56, 287, 349, 394
KpnI	GGTACC	1 cut(s)	380
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	342, 437
LpnPI	CCDG	9 cut(s)	42, 159, 180, 186, 189, 193, 292, 319, 413
LweI	GCATC	1 cut(s)	358
MaeI	CTAG	2 cut(s)	263, 311
MalI	GATC	2 cut(s)	344, 439
MboI	GATC	2 cut(s)	342, 437
MboII	GAAGA	7 cut(s)	56, 278, 344, 347, 377, 379, 476
MfeI	CAATTG	1 cut(s)	69
MluCI	AATT	6 cut(s)	69, 140, 155, 225, 441, 459
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	3 cut(s)	29, 206, 264
Mph1103I	ATGCAT	1 cut(s)	351
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	2 cut(s)	75, 134
MslI	CAYNNNNRTG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	174, 307
MunI	CAATTG	1 cut(s)	69
MvaI	CCWGG	2 cut(s)	174, 307
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	200, 204
NdeII	GATC	2 cut(s)	342, 437
NlaIII	CATG	4 cut(s)	56, 287, 349, 394
NlaIV	GGNNCC	1 cut(s)	378
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	2 cut(s)	314, 448
Psp6I	CCWGG	2 cut(s)	172, 305
PspGI	CCWGG	2 cut(s)	172, 305
PspN4I	GGNNCC	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	430
PsrI	GAACNNNNNNTAC	2 cut(s)	360, 392
RsaI	GTAC	2 cut(s)	232, 378
RsaNI	GTAC	2 cut(s)	231, 377
RseI	CAYNNNNRTG	1 cut(s)	188
SaqAI	TTAA	2 cut(s)	75, 134
Sau3AI	GATC	2 cut(s)	342, 437
Sau96I	GGNCC	1 cut(s)	430
ScrFI	CCNGG	2 cut(s)	174, 307
SetI	ASST	6 cut(s)	9, 27, 120, 378, 382, 472
SfaNI	GCATC	1 cut(s)	358
SinI	GGWCC	1 cut(s)	430
SmiMI	CAYNNNNRTG	1 cut(s)	188
Sse9I	AATT	6 cut(s)	69, 140, 155, 225, 441, 459
SsiI	CCGC	2 cut(s)	105, 433
SspMI	CTAG	2 cut(s)	263, 311
StyD4I	CCNGG	2 cut(s)	172, 305
TaaI	ACNGT	1 cut(s)	235
TasI	AATT	6 cut(s)	69, 140, 155, 225, 441, 459
TfiI	GAWTC	2 cut(s)	314, 448
Tru1I	TTAA	2 cut(s)	75, 134
Tru9I	TTAA	2 cut(s)	75, 134
TspDTI	ATGAA	3 cut(s)	270, 379, 394
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	2 cut(s)	140, 155
XceI	RCATGY	1 cut(s)	287
XcmI	CCANNNNNNNNNTGG	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	2 cut(s)	263, 311
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.