Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0022762

Physical Location & Seq

Genomic Coordinates Reverse (-)

74072956 .. 74081511

Gene Structure 8556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG463900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGTGGCTACGGACTACAAAAAGACCAGTCCCATTTGAACTTTACAAGATATGTGAAAGTGAAAGCTTCATTCCTCAGGGCTTCAAAGCTGCAAAAGATACATTCAAGAAAAAGAATAGTCCTGCCACTGGCGGATTCTTTGCAAGGACAATCCTTGTGGAGGACCGAAAGAATGACTGGTTCTTATCGTTTGATTACATTTCAGGGTTGAATCGCTGTGATAGGTCAGCTGATAGCATGTCAGGAATTGACCTCACAAGTAGTTCTGAGAAAAGTCAGATTCGTGTTTTCTGTGACAAAGCATTTTCACGGCTGAAGGGATCCGACAGGAATTTACCTCAGGTTGTCAGAGTTCAAAACCTTCTCCATAGAGGGATTGGTGTCCATCATGCAGGACTTCTTCCAATTGTTAAGGAAGTTGTTGAAATGCTCTTTTGTCGAGGTGTGATAAAGGTTCTGTTTTCAACAGAGACATTTGCAATGGGAGTGAATGCACCAGCTAGAACGGAATTTAGACAACTACTACCAGGAGAATACACTCAAATGGCAGGCCGTGCTGGCAGGAGAGGACTTGATAAAATTGGTACAGTTATTGTAATGTGCCGTGATGAAATCCTAGAAGAGAGGGATTTGAAGCATGTCATAGTTGGAAGTGCAACCAGGCTAGAATCTCAGTTTCGGCTTACTTATATTATGATCATGCATCTTCTTCGTGTTGAAGAACTGAAGGTGGAGGACATGCTGAAAAGAAGTTTTGCTGAGTTCCATGCTCAGAAGAAACTACCAGATATATATGCAGCAACTAATTCTGATGCGAAAGCTTGCTCAGCCTACGAAAATGAAAATATTTTGTGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000288 GO:0000291 GO:0000956 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0015672 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0019439 GO:0030001 GO:0032991 GO:0034427 GO:0034641 GO:0034655 GO:0035864 GO:0040029 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043928 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0051179 GO:0051234 GO:0055087 GO:0060255 GO:0065007 GO:0070035 GO:0070478 GO:0071704 GO:0090304 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C rRNA_proc-arch

Protein Analysis

286

Amino Acids

32.51

Weight (kDa)

9.12

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022762)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0068041
rosa_multiflora	Rmu_sc0000435.1_g000026
rosa_samantha	Rh5BG463900 Rh5CG485900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	2 cut(s)	315, 328
AcsI	RAATTY	2 cut(s)	331, 509
AcuI	CTGAAG	2 cut(s)	335, 746
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	2 cut(s)	128, 160
AgsI	TTSAA	9 cut(s)	38, 85, 106, 211, 356, 425, 465, 634, 719
AjnI	CCWGG	2 cut(s)	526, 659
AluBI	AGCT	5 cut(s)	66, 89, 230, 500, 821
AluI	AGCT	5 cut(s)	66, 89, 230, 500, 821
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	2 cut(s)	315, 328
AoxI	GGCC	1 cut(s)	550
ApeKI	GCWGC	2 cut(s)	89, 797
ApoI	RAATTY	2 cut(s)	331, 509
AspS9I	GGNCC	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	163
AxyI	CCTNAGG	2 cut(s)	75, 339
BamHI	GGATCC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	76, 809
BccI	CCATC	1 cut(s)	393
BceAI	ACGGC	3 cut(s)	326, 537, 588
BcgI	CGANNNNNNTGC	2 cut(s)	692, 726
BciT130I	CCWGG	2 cut(s)	528, 661
BclI	TGATCA	1 cut(s)	696
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	3 cut(s)	501, 617, 665
BglI	GCCNNNNNGGC	1 cut(s)	558
BisI	GCNGC	2 cut(s)	90, 798
BlpI	GCTNAGC	1 cut(s)	826
BlsI	GCNGC	2 cut(s)	91, 799
Bme1390I	CCNGG	2 cut(s)	528, 661
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	2 cut(s)	528, 661
BmsI	GCATC	2 cut(s)	712, 802
Bpu1102I	GCTNAGC	1 cut(s)	826
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 160
Bse1I	ACTGG	3 cut(s)	26, 133, 182
Bse21I	CCTNAGG	2 cut(s)	75, 339
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	2 cut(s)	528, 661
BseLI	CCNNNNNNNGG	2 cut(s)	128, 160
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	7 cut(s)	89, 258, 353, 686, 750, 785, 840
BseNI	ACTGG	3 cut(s)	26, 133, 182
BseXI	GCAGC	2 cut(s)	76, 809
BshFI	GGCC	1 cut(s)	552
BslFI	GGGAC	1 cut(s)	14
BslI	CCNNNNNNNGG	2 cut(s)	128, 160
BsmAI	GTCTC	1 cut(s)	464
BsmFI	GGGAC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	1 cut(s)	552
Bsp143I	GATC	2 cut(s)	320, 696
Bsp1720I	GCTNAGC	1 cut(s)	826
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	1 cut(s)	552
BspCNI	CTCAG	7 cut(s)	88, 259, 352, 685, 751, 784, 839
BspLI	GGNNCC	1 cut(s)	322
BspPI	GGATC	2 cut(s)	315, 328
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	3 cut(s)	26, 133, 182
BssMI	GATC	2 cut(s)	320, 696
Bst2UI	CCWGG	2 cut(s)	528, 661
Bst4CI	ACNGT	1 cut(s)	589
Bst6I	CTCTTC	1 cut(s)	615
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	550, 559, 823
BstDEI	CTNAG	7 cut(s)	75, 267, 339, 672, 759, 771, 826
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstKTI	GATC	2 cut(s)	323, 699
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	2 cut(s)	320, 696
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 558, 827
BstNI	CCWGG	2 cut(s)	528, 661
BstNSI	RCATGY	3 cut(s)	241, 641, 742
BstSCI	CCNGG	2 cut(s)	526, 659
BstV1I	GCAGC	2 cut(s)	76, 809
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
Bsu36I	CCTNAGG	2 cut(s)	75, 339
BsuRI	GGCC	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	3 cut(s)	550, 559, 823
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	585
CspCI	CAANNNNNGTGG	2 cut(s)	138, 173
CviAII	CATG	6 cut(s)	238, 389, 638, 700, 739, 767
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	7 cut(s)	75, 267, 339, 672, 759, 771, 826
DpnI	GATC	2 cut(s)	322, 698
DpnII	GATC	2 cut(s)	320, 696
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
EciI	GGCGGA	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	163
Eco57I	CTGAAG	2 cut(s)	335, 746
Eco81I	CCTNAGG	2 cut(s)	75, 339
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoRII	CCWGG	2 cut(s)	526, 659
EcoT22I	ATGCAT	1 cut(s)	705
FaeI	CATG	6 cut(s)	241, 392, 641, 703, 742, 770
FaqI	GGGAC	1 cut(s)	14
FatI	CATG	6 cut(s)	237, 388, 637, 699, 738, 766
FbaI	TGATCA	1 cut(s)	696
Fnu4HI	GCNGC	2 cut(s)	90, 798
Fsp4HI	GCNGC	2 cut(s)	90, 798
FspBI	CTAG	3 cut(s)	501, 617, 665
GluI	GCNGC	2 cut(s)	90, 798
HaeIII	GGCC	1 cut(s)	552
Hin1II	CATG	6 cut(s)	241, 392, 641, 703, 742, 770
HindIII	AAGCTT	2 cut(s)	64, 819
HinfI	GANTC	4 cut(s)	135, 211, 280, 668
Hpy188I	TCNGA	6 cut(s)	268, 279, 325, 350, 774, 811
Hpy188III	TCNNGA	2 cut(s)	106, 243
HpyAV	CCTTC	3 cut(s)	310, 371, 721
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4V	TGCA	9 cut(s)	92, 143, 392, 479, 494, 656, 703, 797, 855
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 558, 827
HpyF3I	CTNAG	7 cut(s)	75, 267, 339, 672, 759, 771, 826
Hsp92II	CATG	6 cut(s)	241, 392, 641, 703, 742, 770
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	2 cut(s)	320, 696
Lsp1109I	GCAGC	2 cut(s)	76, 809
LweI	GCATC	2 cut(s)	712, 802
MaeI	CTAG	3 cut(s)	501, 617, 665
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	2 cut(s)	322, 698
MboI	GATC	2 cut(s)	320, 696
MboII	GAAGA	6 cut(s)	392, 632, 698, 701, 731, 787
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	1 cut(s)	320
MluCI	AATT	7 cut(s)	246, 331, 405, 509, 579, 805, 856
MmeI	TCCRAC	2 cut(s)	348, 628
MnlI	CCTC	9 cut(s)	84, 154, 263, 348, 365, 434, 560, 618, 727
Mph1103I	ATGCAT	1 cut(s)	705
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	542
MspA1I	CMGCKG	1 cut(s)	230
MspR9I	CCNGG	2 cut(s)	528, 661
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	2 cut(s)	528, 661
MwoI	GCNNNNNNNGC	3 cut(s)	554, 558, 827
NdeII	GATC	2 cut(s)	320, 696
NlaIII	CATG	6 cut(s)	241, 392, 641, 703, 742, 770
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	293
NsiI	ATGCAT	1 cut(s)	705
NspI	RCATGY	3 cut(s)	241, 641, 742
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	4 cut(s)	135, 211, 280, 668
PkrI	GCNGC	2 cut(s)	91, 799
Psp6I	CCWGG	2 cut(s)	526, 659
PspGI	CCWGG	2 cut(s)	526, 659
PspN4I	GGNNCC	1 cut(s)	322
PspPI	GGNCC	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
RseI	CAYNNNNRTG	1 cut(s)	542
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	2 cut(s)	90, 798
Sau3AI	GATC	2 cut(s)	320, 696
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	528, 661
SfaNI	GCATC	2 cut(s)	712, 802
SinI	GGWCC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	542
Sse9I	AATT	7 cut(s)	246, 331, 405, 509, 579, 805, 856
SsiI	CCGC	1 cut(s)	132
SspI	AATATT	1 cut(s)	847
SspMI	CTAG	3 cut(s)	501, 617, 665
StyD4I	CCNGG	2 cut(s)	526, 659
TaaI	ACNGT	1 cut(s)	589
TaqI	TCGA	1 cut(s)	439
TaqII	GACCGA	1 cut(s)	180
TasI	AATT	7 cut(s)	246, 331, 405, 509, 579, 805, 856
TfiI	GAWTC	4 cut(s)	135, 211, 280, 668
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	89, 797
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	3 cut(s)	58, 624, 855
TspGWI	ACGGA	2 cut(s)	25, 521
TspRI	CASTG	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	163
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	2 cut(s)	331, 509
XceI	RCATGY	3 cut(s)	241, 641, 742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XspI	CTAG	3 cut(s)	501, 617, 665
Zsp2I	ATGCAT	1 cut(s)	705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.