RchiOBHm_Chr5g0069191

SWIM zinc finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0020561
Physical Location & Seq
Forward (+)
75120271 .. 75120727
457 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34458

Sequence Viewer

Length: 384 bp
ATGCAAGGAAACATTTGCAAGCATGTCATCAAAGTCAATATAATCTGTGAAAGTCATCAAGGTTATCAACCTTCCATGTCTTTCCAGTCATTCAAAGAGTTGCTCGTCAGCCTATCAAAGAAACCAATGGAGGATTCAATTTCACAAGATCTATCAATGGCCTGGACTATGCAAATGCTCGAGCAAATACGGGACCTTGTAGAAGTGACTAGAGCCGATGATATTGGCACCGTGGTAAACAATCTGCCACTGCAATGGGCTTCCAGAAAAGGCAGAACAGGTGTTGGAAAGCCATCAACTGCTCTTACGACTTTTCCTTCTAGTAAAAGGAGTGCATCAAGGCAGAAGACCCGCAAGCGAAGAAGATTGTCAACATTAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.35

Weight (kDa)

10.23

Isoelectric Point (pI)

56.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020561)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0069191
rosa_samantha Rh2AG124600 Rh2BG127800 Rh2CG128700 Rh4BG139000 Rh5CG495200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AciI CCGC 1 cut(s) 352
AgsI TTSAA 2 cut(s) 94, 138
AjnI CCWGG 1 cut(s) 161
AjuI GAANNNNNNNTTGG 2 cut(s) 118, 150
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 1 cut(s) 159
AspS9I GGNCC 1 cut(s) 193
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 193
BanI GGYRCC 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 353
BccI CCATC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 163
BfaI CTAG 2 cut(s) 210, 321
BglII AGATCT 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 193
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 193
BmiI GGNNCC 2 cut(s) 194, 229
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 85
Bse3DI GCAATG 1 cut(s) 260
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 1 cut(s) 231
BseMI GCAATG 1 cut(s) 260
BseNI ACTGG 1 cut(s) 85
BshFI GGCC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 206
BsnI GGCC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 179
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 1 cut(s) 352
BspANI GGCC 1 cut(s) 161
BspLI GGNNCC 2 cut(s) 194, 229
BspT107I GGYRCC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 260
BsrI ACTGG 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 1 cut(s) 148
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 232
BstC8I GCNNGC 2 cut(s) 20, 356
BstDSI CCRYGG 1 cut(s) 231
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 148
BstXI CCANNNNNNTGG 1 cut(s) 255
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 231
BtsI GCAGTG 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 2 cut(s) 20, 356
Cfr13I GGNCC 1 cut(s) 193
CviAII CATG 2 cut(s) 23, 76
CviJI RGCY 5 cut(s) 111, 161, 215, 260, 292
CviKI_1 RGCY 5 cut(s) 111, 161, 215, 260, 292
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 193
Eco88I CYCGRG 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 161
FaeI CATG 2 cut(s) 26, 79
FaiI YATR 5 cut(s) 24, 41, 77, 170, 382
FaqI GGGAC 1 cut(s) 206
FatI CATG 2 cut(s) 22, 75
FauI CCCGC 1 cut(s) 359
FspBI CTAG 2 cut(s) 210, 321
HaeIII GGCC 1 cut(s) 161
Hin1II CATG 2 cut(s) 26, 79
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HinfI GANTC 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 238, 372
Hpy188III TCNNGA 1 cut(s) 264
Hpy8I GTNNAC 2 cut(s) 238, 372
HpyAV CCTTC 2 cut(s) 81, 327
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 5 cut(s) 4, 18, 172, 253, 335
Hsp92II CATG 2 cut(s) 26, 79
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 5 cut(s) 98, 148, 175, 264, 277
LweI GCATC 1 cut(s) 344
MaeI CTAG 2 cut(s) 210, 321
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 3 cut(s) 358, 372, 375
MflI RGATCY 1 cut(s) 148
MluCI AATT 1 cut(s) 138
MmeI TCCRAC 1 cut(s) 265
MnlI CCTC 1 cut(s) 124
MseI TTAA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 253
MspR9I CCNGG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 163
NdeII GATC 1 cut(s) 148
NlaIII CATG 2 cut(s) 26, 79
NlaIV GGNNCC 2 cut(s) 194, 229
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 26
PaeR7I CTCGAG 1 cut(s) 179
PfeI GAWTC 1 cut(s) 134
PpuMI RGGWCCY 1 cut(s) 193
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 194, 229
PspPI GGNCC 1 cut(s) 193
PspPPI RGGWCCY 1 cut(s) 193
PspXI VCTCGAGB 1 cut(s) 179
PsuI RGATCY 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 253
SaqAI TTAA 1 cut(s) 377
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 163
SetI ASST 4 cut(s) 64, 73, 198, 283
SfaNI GCATC 1 cut(s) 344
Sfr274I CTCGAG 1 cut(s) 179
SinI GGWCC 1 cut(s) 193
SlaI CTCGAG 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 138
SsiI CCGC 1 cut(s) 352
SspMI CTAG 2 cut(s) 210, 321
StyD4I CCNGG 1 cut(s) 161
TaaI ACNGT 1 cut(s) 232
TaqI TCGA 1 cut(s) 180
TasI AATT 1 cut(s) 138
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TscAI CASTG 1 cut(s) 255
TseFI GTSAC 1 cut(s) 205
Tsp45I GTSAC 1 cut(s) 205
TspRI CASTG 1 cut(s) 255
VpaK11BI GGWCC 1 cut(s) 193
XceI RCATGY 1 cut(s) 26
XhoI CTCGAG 1 cut(s) 179
XspI CTAG 2 cut(s) 210, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.