Rh4BG139000

SWIM zinc finger family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0020561
Physical Location & Seq
Forward (+)
24733745 .. 24734089
345 bp
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UTR
Exon/CDS
Intron
Rh4BG139000.1

Sequence Viewer

Length: 345 bp
ATGATCTGTGAAAGTCATCAAGGTTATCAACCTTCCATGTCTTTCCAGTCATTCAAAGAGTTGCTCGTCAGCCTATCAAAGAAACCAATGGAGGATTCAATTTCACAAGATCTATCAATGGCCCGGACTATGCAAATGCTCGAGCAAATACGGAACCTTGTAGAAGTGACTAGAGCCGATGATATTGGCACCGTGGTAAACAATCTGCCACTGCAATGGGCTTCCAGAAGAGGCAGAACAGGTGTTGGAAAACCATCAACTGCTCTTACGACTCTTCCTTCTAGTAAAAGGAGTGCATCAAGGCAGAAGACCCGCAAGCGAAGAAGACTGTCAACATTAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.87

Weight (kDa)

10.91

Isoelectric Point (pI)

63.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020561)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0069191
rosa_samantha Rh2AG124600 Rh2BG127800 Rh2CG128700 Rh4BG139000 Rh5CG495200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AciI CCGC 1 cut(s) 313
AgsI TTSAA 2 cut(s) 55, 99
AjuI GAANNNNNNNTTGG 2 cut(s) 79, 111
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 124
AvaI CYCGRG 1 cut(s) 140
BanI GGYRCC 1 cut(s) 188
BbsI GAAGAC 2 cut(s) 314, 331
BccI CCATC 1 cut(s) 262
BcnI CCSGG 1 cut(s) 124
BfaI CTAG 2 cut(s) 171, 282
BglII AGATCT 1 cut(s) 109
Bme1390I CCNGG 1 cut(s) 124
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 155, 190
BmrFI CCNGG 1 cut(s) 124
BmsI GCATC 1 cut(s) 305
BpiI GAAGAC 2 cut(s) 314, 331
BpuMI CCSGG 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 192
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 46
BshFI GGCC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 188
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 1 cut(s) 124
BsnI GGCC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 140
Bsp143I GATC 2 cut(s) 3, 109
BspACI CCGC 1 cut(s) 313
BspANI GGCC 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 155, 190
BspT107I GGYRCC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 2 cut(s) 3, 109
Bst4CI ACNGT 2 cut(s) 193, 330
Bst6I CTCTTC 2 cut(s) 223, 279
BstC8I GCNNGC 1 cut(s) 317
BstDSI CCRYGG 1 cut(s) 192
BstKTI GATC 2 cut(s) 6, 112
BstMBI GATC 2 cut(s) 3, 109
BstSCI CCNGG 1 cut(s) 122
BstV2I GAAGAC 2 cut(s) 314, 331
BstX2I RGATCY 1 cut(s) 109
BstXI CCANNNNNNTGG 1 cut(s) 216
BstYI RGATCY 1 cut(s) 109
BsuRI GGCC 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 192
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 317
Cfr13I GGNCC 1 cut(s) 121
CviAII CATG 1 cut(s) 37
CviJI RGCY 4 cut(s) 72, 122, 176, 221
CviKI_1 RGCY 4 cut(s) 72, 122, 176, 221
DpnI GATC 2 cut(s) 5, 111
DpnII GATC 2 cut(s) 3, 109
Eam1104I CTCTTC 2 cut(s) 223, 279
EarI CTCTTC 2 cut(s) 223, 279
Eco88I CYCGRG 1 cut(s) 140
FaeI CATG 1 cut(s) 40
FaiI YATR 3 cut(s) 38, 131, 343
FatI CATG 1 cut(s) 36
FauI CCCGC 1 cut(s) 320
FspBI CTAG 2 cut(s) 171, 282
HaeIII GGCC 1 cut(s) 122
HapII CCGG 1 cut(s) 124
Hin1II CATG 1 cut(s) 40
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HinfI GANTC 2 cut(s) 95, 271
HpaII CCGG 1 cut(s) 124
Hpy166II GTNNAC 2 cut(s) 199, 333
Hpy188III TCNNGA 1 cut(s) 225
Hpy8I GTNNAC 2 cut(s) 199, 333
HpyAV CCTTC 2 cut(s) 42, 288
HpyCH4III ACNGT 2 cut(s) 193, 330
HpyCH4V TGCA 3 cut(s) 133, 214, 296
Hsp92II CATG 1 cut(s) 40
Kzo9I GATC 2 cut(s) 3, 109
LpnPI CCDG 4 cut(s) 59, 137, 225, 238
LweI GCATC 1 cut(s) 305
MaeI CTAG 2 cut(s) 171, 282
MaeIII GTNAC 1 cut(s) 166
MalI GATC 2 cut(s) 5, 111
MboI GATC 2 cut(s) 3, 109
MboII GAAGA 5 cut(s) 240, 266, 319, 333, 336
MflI RGATCY 1 cut(s) 109
MluCI AATT 1 cut(s) 99
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 2 cut(s) 85, 224
MseI TTAA 1 cut(s) 338
MslI CAYNNNNRTG 1 cut(s) 214
MspI CCGG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 124
NciI CCSGG 1 cut(s) 124
NdeII GATC 2 cut(s) 3, 109
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 2 cut(s) 155, 190
NmuCI GTSAC 1 cut(s) 166
PaeR7I CTCGAG 1 cut(s) 140
PfeI GAWTC 1 cut(s) 95
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 155, 190
PspPI GGNCC 1 cut(s) 121
PspXI VCTCGAGB 1 cut(s) 140
PsuI RGATCY 1 cut(s) 109
RseI CAYNNNNRTG 1 cut(s) 214
SaqAI TTAA 1 cut(s) 338
Sau3AI GATC 2 cut(s) 3, 109
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 124
SetI ASST 4 cut(s) 25, 34, 159, 244
SfaNI GCATC 1 cut(s) 305
Sfr274I CTCGAG 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 1 cut(s) 99
SsiI CCGC 1 cut(s) 313
SspMI CTAG 2 cut(s) 171, 282
StyD4I CCNGG 1 cut(s) 122
TaaI ACNGT 2 cut(s) 193, 330
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 99
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 338
Tru9I TTAA 1 cut(s) 338
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 1 cut(s) 216
XhoI CTCGAG 1 cut(s) 140
XspI CTAG 2 cut(s) 171, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.