RchiOBHm_Chr5g0070511

LEC14B homolog

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
76292364 .. 76294385
2022 bp
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UTR
Exon/CDS
Intron
PRQ34573

Sequence Viewer

Length: 159 bp
ATGGCCCCGAGATTGCCGAGTCCGTCAAACAGATGGATGGAGTACCCAGCTCATGCAAGAACTTCGAGACATCCCTTGGATCAGTCGTTGGCTGCATATGGAGACCATTCAGTCCTGCGCGAAAAATGCTTATCTAAAGGTGAAGTTGTTTGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

52

Amino Acids

5.86

Weight (kDa)

8.8

Isoelectric Point (pI)

75.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022714)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0399031 RchiOBHm_Chr5g0070511 RchiOBHm_Chr6g0295231
rosa_samantha Rh2DG399300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 110
AccII CGCG 1 cut(s) 120
AclWI GGATC 1 cut(s) 87
AfaI GTAC 1 cut(s) 44
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 2 cut(s) 61, 96
AlwI GGATC 1 cut(s) 87
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 92
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 7
BbvI GCAGC 1 cut(s) 79
BccI CCATC 2 cut(s) 27, 31
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BcoDI GTCTC 2 cut(s) 61, 96
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 42, 70
BseXI GCAGC 1 cut(s) 79
BseYI CCCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 120
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 7
BsmAI GTCTC 2 cut(s) 61, 96
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 7
Bsp143I GATC 1 cut(s) 79
BspANI GGCC 1 cut(s) 5
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 87
BspTNI GGTCTC 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 75
BstF5I GGATG 2 cut(s) 42, 70
BstFNI CGCG 1 cut(s) 120
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 2 cut(s) 61, 96
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 42, 70
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 43
CviAII CATG 1 cut(s) 53
CviJI RGCY 3 cut(s) 5, 50, 92
CviKI_1 RGCY 3 cut(s) 5, 50, 92
CviQI GTAC 1 cut(s) 43
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DrdI GACNNNNNNGTC 1 cut(s) 110
DseDI GACNNNNNNGTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 75
Eco31I GGTCTC 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 7
EcoT14I CCWWGG 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 75
FaeI CATG 1 cut(s) 56
FaiI YATR 3 cut(s) 54, 97, 99
FatI CATG 1 cut(s) 52
FauNDI CATATG 1 cut(s) 97
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 2 cut(s) 49, 57
Fsp4HI GCNGC 1 cut(s) 93
GlaI GCGC 1 cut(s) 119
GluI GCNGC 1 cut(s) 93
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 56
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 1 cut(s) 19
HphI GGTGA 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 66
HpyCH4V TGCA 2 cut(s) 56, 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 56
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 79
LpnPI CCDG 2 cut(s) 60, 128
Lsp1109I GCAGC 1 cut(s) 79
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MlyI GAGTC 1 cut(s) 28
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 1 cut(s) 126
NdeI CATATG 1 cut(s) 97
NdeII GATC 1 cut(s) 79
NlaIII CATG 1 cut(s) 56
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 42
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 1 cut(s) 27
PpsI GAGTC 1 cut(s) 27
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 28
SetI ASST 2 cut(s) 52, 142
StyI CCWWGG 1 cut(s) 75
TaqI TCGA 1 cut(s) 65
TseI GCWGC 1 cut(s) 92
TspGWI ACGGA 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.