RchiOBHm_Chr6g0257991

Respiratory-chain NADH dehydrogenase, 30 Kd subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017939
Physical Location & Seq
Forward (+)
13455917 .. 13456489
573 bp
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UTR
Exon/CDS
Intron
PRQ23134

Sequence Viewer

Length: 573 bp
ATGTATAACCAATTCATTTTCAAATATAGTTGGGAGACTTTACCTAAGAAATGGGTCAAAAAAATGGAAAGATCGGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTTAAATTGCATACCTATACAAGGGTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACGAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGCTATAACTCACGCATTCGTGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCCGTAGTCAGTCTATTTCCATCAGCCGGCTGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATCAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGATCTTCCTCTGAGTGGATATGTGGAAGTACGGTATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGAACAGCGTAGCGACGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016
Pfam Domains
Protein Families
Complex1_30kDa

Protein Analysis

190

Amino Acids

22.74

Weight (kDa)

6.91

Isoelectric Point (pI)

44.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_30kDa PF00329 40 - 152 4.1e-38 Respiratory-chain NADH dehydrogenase, 30 Kd subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017939)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG00070
prunus_persica Prupe.2G039100_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0257991 RchiOBHm_MTg0498881
rosa_laevigata RLG00000000138 RLG00000000143 RLG00000000153 RLG00000000193 RLG00000000489 RLG00000001028
rosa_samantha Rh1BG017400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 379
AciI CCGC 1 cut(s) 180
AclWI GGATC 2 cut(s) 390, 470
AcsI RAATTY 1 cut(s) 521
AfaI GTAC 3 cut(s) 238, 264, 465
AfiI CCNNNNNNNGG 4 cut(s) 153, 323, 330, 449
AflIII ACRYGT 1 cut(s) 487
AgsI TTSAA 4 cut(s) 22, 119, 161, 215
Alw26I GTCTC 1 cut(s) 29
AlwI GGATC 2 cut(s) 390, 470
Aor13HI TCCGGA 1 cut(s) 379
ApoI RAATTY 1 cut(s) 521
BccI CCATC 2 cut(s) 325, 377
BceAI ACGGC 1 cut(s) 375
BcoDI GTCTC 1 cut(s) 29
BfaI CTAG 1 cut(s) 543
BglII AGATCT 2 cut(s) 89, 436
BmcAI AGTACT 1 cut(s) 238
Bsa29I ATCGAT 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 548
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 323, 330, 449
Bse118I RCCGGY 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 270
BseAI TCCGGA 1 cut(s) 379
BseCI ATCGAT 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 548
BseGI GGATG 2 cut(s) 376, 421
BseLI CCNNNNNNNGG 4 cut(s) 153, 323, 330, 449
BseMII CTCAG 2 cut(s) 224, 437
BseNI ACTGG 1 cut(s) 270
BsgI GTGCAG 1 cut(s) 294
BshVI ATCGAT 1 cut(s) 171
BsiSI CCGG 2 cut(s) 324, 380
BslI CCNNNNNNNGG 4 cut(s) 153, 323, 330, 449
BsmAI GTCTC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 255
Bsp13I TCCGGA 1 cut(s) 379
Bsp1407I TGTACA 1 cut(s) 262
Bsp143I GATC 6 cut(s) 71, 89, 168, 382, 436, 475
BspACI CCGC 1 cut(s) 180
BspCNI CTCAG 2 cut(s) 225, 438
BspDI ATCGAT 1 cut(s) 171
BspEI TCCGGA 1 cut(s) 379
BspPI GGATC 2 cut(s) 390, 470
BsrFI RCCGGY 1 cut(s) 323
BsrGI TGTACA 1 cut(s) 262
BsrI ACTGG 1 cut(s) 270
BssAI RCCGGY 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 548
BssMI GATC 6 cut(s) 71, 89, 168, 382, 436, 475
BssT1I CCWWGG 1 cut(s) 548
Bst4CI ACNGT 1 cut(s) 468
BstAUI TGTACA 1 cut(s) 262
BstC8I GCNNGC 1 cut(s) 325
BstDEI CTNAG 3 cut(s) 45, 233, 446
BstENI CCTNNNNNAGG 1 cut(s) 151
BstF5I GGATG 2 cut(s) 376, 421
BstKTI GATC 6 cut(s) 74, 92, 171, 385, 439, 478
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 6 cut(s) 71, 89, 168, 382, 436, 475
BstX2I RGATCY 3 cut(s) 89, 382, 436
BstYI RGATCY 3 cut(s) 89, 382, 436
Bsu15I ATCGAT 1 cut(s) 171
BsuTUI ATCGAT 1 cut(s) 171
BtsCI GGATG 2 cut(s) 376, 421
BtsIMutI CAGTG 1 cut(s) 277
Cac8I GCNNGC 1 cut(s) 325
Cfr10I RCCGGY 1 cut(s) 323
ClaI ATCGAT 1 cut(s) 171
Csp6I GTAC 3 cut(s) 237, 263, 464
CviAII CATG 1 cut(s) 80
CviJI RGCY 2 cut(s) 323, 327
CviKI_1 RGCY 2 cut(s) 323, 327
CviQI GTAC 3 cut(s) 237, 263, 464
DdeI CTNAG 3 cut(s) 45, 233, 446
DpnI GATC 6 cut(s) 73, 91, 170, 384, 438, 477
DpnII GATC 6 cut(s) 71, 89, 168, 382, 436, 475
Eco130I CCWWGG 1 cut(s) 548
EcoNI CCTNNNNNAGG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 548
ErhI CCWWGG 1 cut(s) 548
FaeI CATG 1 cut(s) 83
FatI CATG 1 cut(s) 79
FokI GGATG 2 cut(s) 363, 408
FspBI CTAG 1 cut(s) 543
HapII CCGG 2 cut(s) 324, 380
Hin1II CATG 1 cut(s) 83
HpaII CCGG 2 cut(s) 324, 380
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 4 cut(s) 76, 94, 447, 499
Hpy188III TCNNGA 3 cut(s) 198, 380, 479
Hpy8I GTNNAC 1 cut(s) 263
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 1 cut(s) 204
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4IV ACGT 1 cut(s) 487
HpyCH4V TGCA 2 cut(s) 142, 275
HpyF3I CTNAG 3 cut(s) 45, 233, 446
HpySE526I ACGT 1 cut(s) 487
Hsp92II CATG 1 cut(s) 83
Kpn2I TCCGGA 1 cut(s) 379
KroI GCCGGC 1 cut(s) 323
KroNI GCCGGC 1 cut(s) 325
Kzo9I GATC 6 cut(s) 71, 89, 168, 382, 436, 475
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 5 cut(s) 283, 313, 337, 393, 492
MaeI CTAG 1 cut(s) 543
MaeII ACGT 1 cut(s) 487
MaeIII GTNAC 1 cut(s) 283
MalI GATC 6 cut(s) 73, 91, 170, 384, 438, 477
MboI GATC 6 cut(s) 71, 89, 168, 382, 436, 475
MboII GAAGA 3 cut(s) 219, 357, 431
MflI RGATCY 3 cut(s) 89, 382, 436
MluCI AATT 5 cut(s) 11, 119, 137, 226, 521
MnlI CCTC 2 cut(s) 409, 453
MroI TCCGGA 1 cut(s) 379
MroNI GCCGGC 1 cut(s) 323
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 509
MspI CCGG 2 cut(s) 324, 380
Mva1269I GAATGC 1 cut(s) 255
NaeI GCCGGC 1 cut(s) 325
NdeII GATC 6 cut(s) 71, 89, 168, 382, 436, 475
NgoMIV GCCGGC 1 cut(s) 323
NlaIII CATG 1 cut(s) 83
PctI GAATGC 1 cut(s) 255
PdiI GCCGGC 1 cut(s) 325
PsuI RGATCY 3 cut(s) 89, 382, 436
RsaI GTAC 3 cut(s) 238, 264, 465
RsaNI GTAC 3 cut(s) 237, 263, 464
RseI CAYNNNNRTG 1 cut(s) 509
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 6 cut(s) 71, 89, 168, 382, 436, 475
ScaI AGTACT 1 cut(s) 238
SetI ASST 3 cut(s) 46, 149, 490
SmiMI CAYNNNNRTG 1 cut(s) 509
Sse9I AATT 5 cut(s) 11, 119, 137, 226, 521
SsiI CCGC 1 cut(s) 180
SspMI CTAG 1 cut(s) 543
StyI CCWWGG 1 cut(s) 548
TaaI ACNGT 1 cut(s) 468
TaiI ACGT 1 cut(s) 490
TaqI TCGA 4 cut(s) 171, 199, 414, 534
TasI AATT 5 cut(s) 11, 119, 137, 226, 521
TatI WGTACW 2 cut(s) 236, 262
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 4
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 277
XagI CCTNNNNNAGG 1 cut(s) 151
XapI RAATTY 1 cut(s) 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 324
XspI CTAG 1 cut(s) 543
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.