Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0017939

Physical Location & Seq

Genomic Coordinates Reverse (-)

2567718 .. 2568227

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG017400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAAAGATCGGAACATGGGAATAGATCTGATACCAATACGGACTACCCATTTCAATTATTGTGCTTTCTTAAATTGCATACCTATACAAGGGTTCAAGTTTTGATCGATATTTGCGGAGTTGATTATCCTTCTCGAAAACGAAGATTTGAAGTGGTCTATAATTTACTGAGTACTCGCTATAACTCACGCATTCGTGTACAAACCAGTGCAGACGAAGTAACACGAATATCTCCCGTAGTCAGTCTATTTCCATCAGCCGGCTGGTGGGAGCGAGAAGTTTGGGATATGTTTGGTGTTTCTTCCATCAATCATCCGGATCTACGCCGTATATCAACAGATTATGGTTTCGAGGGTCATCCATTACGAAAAGATCTTCCTCTGAGTGGATATGTGGAAGTACGGTATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTCGATTTTGCTAGTCCTTGGGAACAGCGTAGCGACGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0008137 GO:0008150 GO:0008152 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050136 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Complex1_30kDa

Protein Analysis

169

Amino Acids

20.0

Weight (kDa)

5.6

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_30kDa	PF00329	19 - 131	2.9e-38	Respiratory-chain NADH dehydrogenase, 30 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017939)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00070
prunus_persica	Prupe.2G039100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0257991 RchiOBHm_MTg0498881
rosa_laevigata	RLG00000000138 RLG00000000143 RLG00000000153 RLG00000000193 RLG00000000489 RLG00000001028
rosa_samantha	Rh1BG017400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	1 cut(s)	117
AclWI	GGATC	2 cut(s)	327, 407
AcsI	RAATTY	1 cut(s)	458
AfaI	GTAC	3 cut(s)	175, 201, 402
AfiI	CCNNNNNNNGG	4 cut(s)	90, 260, 267, 386
AflIII	ACRYGT	1 cut(s)	424
AgsI	TTSAA	3 cut(s)	56, 98, 152
AlwI	GGATC	2 cut(s)	327, 407
Aor13HI	TCCGGA	1 cut(s)	316
ApoI	RAATTY	1 cut(s)	458
BccI	CCATC	2 cut(s)	262, 314
BceAI	ACGGC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	480
BglII	AGATCT	2 cut(s)	26, 373
BmcAI	AGTACT	1 cut(s)	175
Bsa29I	ATCGAT	1 cut(s)	108
BsaJI	CCNNGG	1 cut(s)	485
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	4 cut(s)	90, 260, 267, 386
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	1 cut(s)	207
BseAI	TCCGGA	1 cut(s)	316
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	485
BseGI	GGATG	2 cut(s)	313, 358
BseLI	CCNNNNNNNGG	4 cut(s)	90, 260, 267, 386
BseMII	CTCAG	2 cut(s)	161, 374
BseNI	ACTGG	1 cut(s)	207
BsgI	GTGCAG	1 cut(s)	231
BshVI	ATCGAT	1 cut(s)	108
BsiSI	CCGG	2 cut(s)	261, 317
BslI	CCNNNNNNNGG	4 cut(s)	90, 260, 267, 386
BsmI	GAATGC	1 cut(s)	192
Bsp13I	TCCGGA	1 cut(s)	316
Bsp1407I	TGTACA	1 cut(s)	199
Bsp143I	GATC	6 cut(s)	8, 26, 105, 319, 373, 412
BspACI	CCGC	1 cut(s)	117
BspCNI	CTCAG	2 cut(s)	162, 375
BspDI	ATCGAT	1 cut(s)	108
BspEI	TCCGGA	1 cut(s)	316
BspPI	GGATC	2 cut(s)	327, 407
BsrFI	RCCGGY	1 cut(s)	260
BsrGI	TGTACA	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	485
BssMI	GATC	6 cut(s)	8, 26, 105, 319, 373, 412
BssT1I	CCWWGG	1 cut(s)	485
Bst4CI	ACNGT	1 cut(s)	405
BstAUI	TGTACA	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	170, 383
BstENI	CCTNNNNNAGG	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	313, 358
BstKTI	GATC	6 cut(s)	11, 29, 108, 322, 376, 415
BstMBI	GATC	6 cut(s)	8, 26, 105, 319, 373, 412
BstX2I	RGATCY	3 cut(s)	26, 319, 373
BstYI	RGATCY	3 cut(s)	26, 319, 373
Bsu15I	ATCGAT	1 cut(s)	108
BsuTUI	ATCGAT	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	313, 358
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	260
ClaI	ATCGAT	1 cut(s)	108
Csp6I	GTAC	3 cut(s)	174, 200, 401
CviAII	CATG	1 cut(s)	17
CviJI	RGCY	2 cut(s)	260, 264
CviKI_1	RGCY	2 cut(s)	260, 264
CviQI	GTAC	3 cut(s)	174, 200, 401
DdeI	CTNAG	2 cut(s)	170, 383
DpnI	GATC	6 cut(s)	10, 28, 107, 321, 375, 414
DpnII	GATC	6 cut(s)	8, 26, 105, 319, 373, 412
Eco130I	CCWWGG	1 cut(s)	485
EcoNI	CCTNNNNNAGG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	485
ErhI	CCWWGG	1 cut(s)	485
FaeI	CATG	1 cut(s)	20
FatI	CATG	1 cut(s)	16
FokI	GGATG	2 cut(s)	300, 345
FspBI	CTAG	1 cut(s)	480
HapII	CCGG	2 cut(s)	261, 317
Hin1II	CATG	1 cut(s)	20
HpaII	CCGG	2 cut(s)	261, 317
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	4 cut(s)	13, 31, 384, 436
Hpy188III	TCNNGA	3 cut(s)	135, 317, 416
Hpy8I	GTNNAC	1 cut(s)	200
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	1 cut(s)	141
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	2 cut(s)	79, 212
HpyF3I	CTNAG	2 cut(s)	170, 383
HpySE526I	ACGT	1 cut(s)	424
Hsp92II	CATG	1 cut(s)	20
Kpn2I	TCCGGA	1 cut(s)	316
KroI	GCCGGC	1 cut(s)	260
KroNI	GCCGGC	1 cut(s)	262
Kzo9I	GATC	6 cut(s)	8, 26, 105, 319, 373, 412
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	220, 250, 274, 330, 429
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	6 cut(s)	10, 28, 107, 321, 375, 414
MboI	GATC	6 cut(s)	8, 26, 105, 319, 373, 412
MboII	GAAGA	3 cut(s)	156, 294, 368
MflI	RGATCY	3 cut(s)	26, 319, 373
MluCI	AATT	4 cut(s)	56, 74, 163, 458
MnlI	CCTC	2 cut(s)	346, 390
MroI	TCCGGA	1 cut(s)	316
MroNI	GCCGGC	1 cut(s)	260
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	446
MspI	CCGG	2 cut(s)	261, 317
Mva1269I	GAATGC	1 cut(s)	192
NaeI	GCCGGC	1 cut(s)	262
NdeII	GATC	6 cut(s)	8, 26, 105, 319, 373, 412
NgoMIV	GCCGGC	1 cut(s)	260
NlaIII	CATG	1 cut(s)	20
PctI	GAATGC	1 cut(s)	192
PdiI	GCCGGC	1 cut(s)	262
PsuI	RGATCY	3 cut(s)	26, 319, 373
RsaI	GTAC	3 cut(s)	175, 201, 402
RsaNI	GTAC	3 cut(s)	174, 200, 401
RseI	CAYNNNNRTG	1 cut(s)	446
SaqAI	TTAA	1 cut(s)	72
Sau3AI	GATC	6 cut(s)	8, 26, 105, 319, 373, 412
ScaI	AGTACT	1 cut(s)	175
SetI	ASST	2 cut(s)	86, 427
SmiMI	CAYNNNNRTG	1 cut(s)	446
Sse9I	AATT	4 cut(s)	56, 74, 163, 458
SsiI	CCGC	1 cut(s)	117
SspMI	CTAG	1 cut(s)	480
StyI	CCWWGG	1 cut(s)	485
TaaI	ACNGT	1 cut(s)	405
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	4 cut(s)	108, 136, 351, 471
TasI	AATT	4 cut(s)	56, 74, 163, 458
TatI	WGTACW	2 cut(s)	173, 199
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	214
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	214
XagI	CCTNNNNNAGG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	458
XcmI	CCANNNNNNNNNTGG	1 cut(s)	261
XspI	CTAG	1 cut(s)	480
ZrmI	AGTACT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.