RchiOBHm_Chr6g0266401

Ribonuclease P protein subunit p25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0025082
Physical Location & Seq
Reverse (-)
22700316 .. 22701767
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23891

Sequence Viewer

Length: 333 bp
ATGAGATCCACTGAACTGAAAGAGATTAAAGAAGAAGAAGCCGCCACATTGCTCAGTTCTGGGTGCCGTTCTTTTATAAGTACTATGGGGAAAAGCTCTTATAATGTGGCTATTCTAGTGGACTTCAGTAGGGAACATCTTCCTGAGGGCTACTATATAGCTATCTATATATGCAATTGGTTGGACAAGGGTTCGGACAAAATTGTTTTCAAGGCTATGGGAAGAGCTATCAATAAGACTGTGACGATTATGGAGCTAATTAAGTATACTACAATTGGATCCACCGACATAACTGATACTTGGGAACCCCTTGAGGAAGGCCTTCTACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

110

Amino Acids

12.39

Weight (kDa)

4.97

Isoelectric Point (pI)

30.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 56 - 89 7.6e-08 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025082)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0266401
rosa_samantha Rh4AG144600 Rh4BG226400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 77, 102
AccB1I GGYRCC 1 cut(s) 63
AccI GTMKAC 1 cut(s) 266
AciI CCGC 1 cut(s) 42
AclWI GGATC 2 cut(s) 273, 286
AcuI CTGAAG 1 cut(s) 109
AfaI GTAC 1 cut(s) 82
AgsI TTSAA 1 cut(s) 211
AluBI AGCT 4 cut(s) 96, 161, 227, 256
AluI AGCT 4 cut(s) 96, 161, 227, 256
AlwI GGATC 2 cut(s) 273, 286
AoxI GGCC 1 cut(s) 319
Asp700I GAANNNNTTC 2 cut(s) 138, 321
AxyI CCTNAGG 1 cut(s) 144
BamHI GGATCC 1 cut(s) 278
BanI GGYRCC 1 cut(s) 63
BarI GAAGNNNNNNTAC 1 cut(s) 309
BceAI ACGGC 1 cut(s) 51
BfaI CTAG 1 cut(s) 116
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
BmcAI AGTACT 1 cut(s) 82
BmiI GGNNCC 3 cut(s) 65, 280, 306
BpuEI CTTGAG 1 cut(s) 332
Bse21I CCTNAGG 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 47
BseMII CTCAG 2 cut(s) 67, 135
BshFI GGCC 1 cut(s) 321
BshNI GGYRCC 1 cut(s) 63
BsnI GGCC 1 cut(s) 321
Bsp143I GATC 2 cut(s) 5, 278
BspACI CCGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 2 cut(s) 66, 136
BspLI GGNNCC 3 cut(s) 65, 280, 306
BspPI GGATC 2 cut(s) 273, 286
BspQI GCTCTTC 1 cut(s) 217
BspT107I GGYRCC 1 cut(s) 63
BsrDI GCAATG 1 cut(s) 47
BssMI GATC 2 cut(s) 5, 278
BssNAI GTATAC 1 cut(s) 267
Bst1107I GTATAC 1 cut(s) 267
Bst4CI ACNGT 2 cut(s) 241, 330
Bst6I CTCTTC 1 cut(s) 217
BstDEI CTNAG 2 cut(s) 53, 144
BstKTI GATC 2 cut(s) 8, 281
BstMBI GATC 2 cut(s) 5, 278
BstX2I RGATCY 2 cut(s) 5, 278
BstYI RGATCY 2 cut(s) 5, 278
BstZ17I GTATAC 1 cut(s) 267
Bsu36I CCTNAGG 1 cut(s) 144
BsuRI GGCC 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 9
Csp6I GTAC 1 cut(s) 81
CviJI RGCY 9 cut(s) 41, 96, 110, 150, 161, 215, 227, 256, 321
CviKI_1 RGCY 9 cut(s) 41, 96, 110, 150, 161, 215, 227, 256, 321
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 2 cut(s) 53, 144
DpnI GATC 2 cut(s) 7, 280
DpnII GATC 2 cut(s) 5, 278
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco147I AGGCCT 1 cut(s) 321
Eco57I CTGAAG 1 cut(s) 109
Eco81I CCTNAGG 1 cut(s) 144
FblI GTMKAC 1 cut(s) 266
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 116
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 321
Hpy166II GTNNAC 2 cut(s) 121, 267
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 2 cut(s) 121, 267
HpyAV CCTTC 2 cut(s) 311, 332
HpyCH4III ACNGT 2 cut(s) 241, 330
HpyCH4V TGCA 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 53, 144
Kzo9I GATC 2 cut(s) 5, 278
LguI GCTCTTC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 2 cut(s) 45, 156
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 7, 280
MboI GATC 2 cut(s) 5, 278
MboII GAAGA 4 cut(s) 44, 47, 131, 234
MfeI CAATTG 2 cut(s) 175, 273
MflI RGATCY 2 cut(s) 5, 278
MluCI AATT 4 cut(s) 175, 201, 258, 273
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 2 cut(s) 139, 307
MroXI GAANNNNTTC 2 cut(s) 138, 321
MseI TTAA 2 cut(s) 27, 261
MunI CAATTG 2 cut(s) 175, 273
NdeII GATC 2 cut(s) 5, 278
NlaIV GGNNCC 3 cut(s) 65, 280, 306
NmuCI GTSAC 1 cut(s) 241
PceI AGGCCT 1 cut(s) 321
PciSI GCTCTTC 1 cut(s) 217
PdmI GAANNNNTTC 2 cut(s) 138, 321
PkrI GCNGC 1 cut(s) 43
PsiI TTATAA 2 cut(s) 77, 102
PspN4I GGNNCC 3 cut(s) 65, 280, 306
PsuI RGATCY 2 cut(s) 5, 278
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 217
SaqAI TTAA 2 cut(s) 27, 261
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 5, 278
ScaI AGTACT 1 cut(s) 82
SetI ASST 4 cut(s) 98, 163, 229, 258
SgeI CNNG 7 cut(s) 72, 128, 155, 199, 223, 312, 323
SmlI CTYRAG 1 cut(s) 311
SmoI CTYRAG 1 cut(s) 311
Sse9I AATT 4 cut(s) 175, 201, 258, 273
SseBI AGGCCT 1 cut(s) 321
SsiI CCGC 1 cut(s) 42
SspMI CTAG 1 cut(s) 116
StuI AGGCCT 1 cut(s) 321
TaaI ACNGT 2 cut(s) 241, 330
TasI AATT 4 cut(s) 175, 201, 258, 273
TatI WGTACW 1 cut(s) 80
TauI GCSGC 1 cut(s) 44
Tru1I TTAA 2 cut(s) 27, 261
Tru9I TTAA 2 cut(s) 27, 261
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspRI CASTG 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 266
XmnI GAANNNNTTC 2 cut(s) 138, 321
XspI CTAG 1 cut(s) 116
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.