Rh4BG226400

Ribonuclease P protein subunit p25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0025082
Physical Location & Seq
Forward (+)
38978206 .. 38980928
2723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG226400.1

Sequence Viewer

Length: 585 bp
ATGATGGATCGGTACCAGAGAGTGAAGAAGCCAAGAGCAGAGAAGCCAATTGATGAGAATGAGATTAGGATTACGAGCCAAGGGAGGATGAGAAACTACATCACTTACGCCATGACTCTGCTTCAGAGAATCTCCCCCAAGTTCCAGAGGCACATGTTAAATGAACTTTCTGAAACGGCGACTTTAGAGTTGAAGGGTTCTTCAAAATGTTCATGGACTGTTTTATCCATTGAACTGAAAGAGTTTAAAGAAGAAGAAGCCACCACATTGCTCAGTTCTGGGTTCCGTTCTTTTACAAGTACTATAGGGAAAAGCTCTTATAATGTGGCTATTCCAGTGGACTTCAGTAGGGAGCATCTTCCTGAGGGCTACTATATAGCTATCTATATATGCAATTGGTTGGACAAGGGTTCAGACGAAATTGTTTTCAAGGCTATGGGAAGAGCTATCAATAAGACTGTGACGATTGTGGAGCTAATTAAGAGAAGAATTGTCGGTCTTCACCAGTATACTACAATTGAATCCACTGACATAACTGATACTTGGGAACCCCTTGAGGAATGCCTTCTACCGTTTATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

194

Amino Acids

22.5

Weight (kDa)

6.85

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 129 - 176 2.3e-15 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025082)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0266401
rosa_samantha Rh4AG144600 Rh4BG226400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
Acc65I GGTACC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 12
AccI GTMKAC 1 cut(s) 509
AclWI GGATC 1 cut(s) 15
AcuI CTGAAG 2 cut(s) 107, 328
AfaI GTAC 2 cut(s) 14, 301
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 5 cut(s) 193, 204, 233, 430, 521
AluBI AGCT 4 cut(s) 315, 380, 446, 475
AluI AGCT 4 cut(s) 315, 380, 446, 475
AlwI GGATC 1 cut(s) 15
AseI ATTAAT 1 cut(s) 579
Asp700I GAANNNNTTC 1 cut(s) 564
Asp718I GGTACC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 494
AxyI CCTNAGG 1 cut(s) 363
BanI GGYRCC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 491
BceAI ACGGC 1 cut(s) 192
BfmI CTRYAG 1 cut(s) 303
BmcAI AGTACT 1 cut(s) 301
BmiI GGNNCC 3 cut(s) 14, 284, 549
BmsI GCATC 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 491
BpuEI CTTGAG 1 cut(s) 575
BsaJI CCNNGG 1 cut(s) 79
Bse1I ACTGG 2 cut(s) 335, 505
Bse21I CCTNAGG 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 1 cut(s) 93
BseMI GCAATG 1 cut(s) 266
BseMII CTCAG 2 cut(s) 286, 354
BseNI ACTGG 2 cut(s) 335, 505
BshNI GGYRCC 1 cut(s) 12
BsmI GAATGC 1 cut(s) 566
Bsp143I GATC 1 cut(s) 7
BspCNI CTCAG 2 cut(s) 285, 355
BspLI GGNNCC 3 cut(s) 14, 284, 549
BspPI GGATC 1 cut(s) 15
BspQI GCTCTTC 1 cut(s) 436
BspT107I GGYRCC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 266
BsrI ACTGG 2 cut(s) 335, 505
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 7
BssNAI GTATAC 1 cut(s) 510
BssT1I CCWWGG 1 cut(s) 79
Bst1107I GTATAC 1 cut(s) 510
Bst4CI ACNGT 3 cut(s) 220, 460, 573
Bst6I CTCTTC 1 cut(s) 436
BstDEI CTNAG 2 cut(s) 272, 363
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 1 cut(s) 10
BstMBI GATC 1 cut(s) 7
BstNSI RCATGY 1 cut(s) 157
BstSFI CTRYAG 1 cut(s) 303
BstV2I GAAGAC 1 cut(s) 491
BstZ17I GTATAC 1 cut(s) 510
Bsu36I CCTNAGG 1 cut(s) 363
BtsCI GGATG 1 cut(s) 93
BtsIMutI CAGTG 2 cut(s) 342, 525
Csp6I GTAC 2 cut(s) 13, 300
CviAII CATG 3 cut(s) 112, 154, 213
CviQI GTAC 2 cut(s) 13, 300
DdeI CTNAG 2 cut(s) 272, 363
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DraI TTTAAA 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 79
Eco57I CTGAAG 2 cut(s) 107, 328
Eco81I CCTNAGG 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 3 cut(s) 115, 157, 216
FatI CATG 3 cut(s) 111, 153, 212
FblI GTMKAC 1 cut(s) 509
FokI GGATG 1 cut(s) 100
Hin1II CATG 3 cut(s) 115, 157, 216
HinfI GANTC 3 cut(s) 115, 129, 521
HphI GGTGA 1 cut(s) 494
Hpy166II GTNNAC 2 cut(s) 340, 510
Hpy188I TCNGA 3 cut(s) 126, 172, 415
Hpy188III TCNNGA 2 cut(s) 145, 362
Hpy8I GTNNAC 2 cut(s) 340, 510
HpyAV CCTTC 2 cut(s) 187, 575
HpyCH4III ACNGT 3 cut(s) 220, 460, 573
HpyCH4V TGCA 1 cut(s) 393
HpyF3I CTNAG 2 cut(s) 272, 363
Hsp92II CATG 3 cut(s) 115, 157, 216
KpnI GGTACC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 7
LguI GCTCTTC 1 cut(s) 436
LmnI GCTCC 2 cut(s) 352, 472
LpnPI CCDG 6 cut(s) 29, 158, 264, 348, 375, 518
LweI GCATC 1 cut(s) 364
MaeIII GTNAC 1 cut(s) 460
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 8 cut(s) 37, 192, 263, 266, 350, 453, 491, 498
MfeI CAATTG 3 cut(s) 48, 394, 516
MluCI AATT 7 cut(s) 48, 394, 420, 477, 489, 516, 580
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 4 cut(s) 78, 141, 358, 550
MroXI GAANNNNTTC 1 cut(s) 564
MseI TTAA 5 cut(s) 158, 246, 480, 579, 583
MunI CAATTG 3 cut(s) 48, 394, 516
Mva1269I GAATGC 1 cut(s) 566
NdeII GATC 1 cut(s) 7
NlaIII CATG 3 cut(s) 115, 157, 216
NlaIV GGNNCC 3 cut(s) 14, 284, 549
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 1 cut(s) 157
PacI TTAATTAA 1 cut(s) 583
PciI ACATGT 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 436
PctI GAATGC 1 cut(s) 566
PdmI GAANNNNTTC 1 cut(s) 564
PfeI GAWTC 2 cut(s) 129, 521
PleI GAGTC 1 cut(s) 109
PpsI GAGTC 1 cut(s) 109
PscI ACATGT 1 cut(s) 153
PshBI ATTAAT 1 cut(s) 579
PsiI TTATAA 1 cut(s) 321
PspN4I GGNNCC 3 cut(s) 14, 284, 549
RsaI GTAC 2 cut(s) 14, 301
RsaNI GTAC 2 cut(s) 13, 300
SapI GCTCTTC 1 cut(s) 436
SaqAI TTAA 5 cut(s) 158, 246, 480, 579, 583
Sau3AI GATC 1 cut(s) 7
ScaI AGTACT 1 cut(s) 301
SchI GAGTC 1 cut(s) 109
SetI ASST 4 cut(s) 317, 382, 448, 477
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 7 cut(s) 48, 394, 420, 477, 489, 516, 580
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 3 cut(s) 220, 460, 573
TaqII GACCGA 1 cut(s) 485
TasI AATT 7 cut(s) 48, 394, 420, 477, 489, 516, 580
TatI WGTACW 1 cut(s) 299
TfiI GAWTC 2 cut(s) 129, 521
Tru1I TTAA 5 cut(s) 158, 246, 480, 579, 583
Tru9I TTAA 5 cut(s) 158, 246, 480, 579, 583
TscAI CASTG 2 cut(s) 342, 532
TseFI GTSAC 1 cut(s) 460
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 2 cut(s) 177, 201
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 2 cut(s) 342, 532
VspI ATTAAT 1 cut(s) 579
XceI RCATGY 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 564
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.