Rh4AG144600

Ribonuclease P protein subunit p25-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0025082
Physical Location & Seq
Forward (+)
36589148 .. 36619142
29995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG144600.1

Sequence Viewer

Length: 615 bp
ATGGATTGGTACCAGAGAGTGGAGAAGCCAAGAGCAGAGACGCCAATTGATGAGAATGAGATTAGGATTACGAGCCAAGGGAGGATGCGAAACTACATCACTTACGCCATGACTCTGCTTCAGAGAATCACCCCCAAGTTCCAGAGGCACATGTTAAATGAACTTTCTGAAATGGCGACTTTGGAGTTGAAGGGCTCTTCAAAATGTTCATGGACTGTTTTATCCACTGAACTAAAAGAGATTAAAGAAGAAGAAGCCGCCACATTGCTAAGTTCTGGGTTCCGTTCTTTTACAAGTACTATGGGGAAAAGCTCTTATAATGTGGTTGTTCCAGTGGACTTCAGTAGGGAGCATCTTCCTGAGGGCTACTATATAGCTATCTATATATGCAATTGGTTGGACAAGGGTTCGGACGAAATTGTTTTGAAGGCTATGGGAAGAGCTATCAACAAGACTATGACGATTGTGGAGCTAATTAAGAGTTGCAGAGAGGGGTCAGTTTCGGTTCAGTTTCCAGGTCCATGCCATGTTGGGGAGAGGTCCAAGAGAATCAGGAGTGAGAGGGATCAGTATAGCCTGGCCACTATGGTTCTAAGTAGTAACATATATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 map03008 map03013
Pfam Domains
Protein Families
Alba

Protein Analysis

204

Amino Acids

23.37

Weight (kDa)

8.29

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 128 - 161 2.1e-07 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025082)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0266401
rosa_samantha Rh4AG144600 Rh4BG226400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
Acc65I GGTACC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 9
AccB7I CCANNNNNTGG 1 cut(s) 19
AciI CCGC 1 cut(s) 258
AclWI GGATC 1 cut(s) 573
AcoI YGGCCR 1 cut(s) 579
AcuI CTGAAG 2 cut(s) 104, 325
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 2 cut(s) 11, 298
AfiI CCNNNNNNNGG 2 cut(s) 19, 532
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 3 cut(s) 190, 201, 427
AjnI CCWGG 2 cut(s) 514, 576
AluBI AGCT 4 cut(s) 312, 377, 443, 472
AluI AGCT 4 cut(s) 312, 377, 443, 472
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 1 cut(s) 573
AoxI GGCC 1 cut(s) 579
Asp718I GGTACC 1 cut(s) 9
AspS9I GGNCC 2 cut(s) 518, 540
AsuHPI GGTGA 1 cut(s) 121
AvaII GGWCC 2 cut(s) 518, 540
AxyI CCTNAGG 1 cut(s) 360
BalI TGGCCA 1 cut(s) 581
BanI GGYRCC 1 cut(s) 9
BanII GRGCYC 1 cut(s) 197
BciT130I CCWGG 2 cut(s) 516, 578
BcoDI GTCTC 1 cut(s) 32
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
BmcAI AGTACT 1 cut(s) 298
Bme1390I CCNGG 2 cut(s) 516, 578
Bme18I GGWCC 2 cut(s) 518, 540
BmgT120I GGNCC 2 cut(s) 518, 540
BmiI GGNNCC 2 cut(s) 11, 281
BmrFI CCNGG 2 cut(s) 516, 578
BmsI GCATC 2 cut(s) 75, 361
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 76
Bsc4I CCNNNNNNNGG 2 cut(s) 19, 532
Bse1I ACTGG 1 cut(s) 332
Bse21I CCTNAGG 1 cut(s) 360
Bse3DI GCAATG 1 cut(s) 263
BseBI CCWGG 2 cut(s) 516, 578
BseDI CCNNGG 1 cut(s) 76
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 2 cut(s) 19, 532
BseMI GCAATG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 332
BshFI GGCC 1 cut(s) 581
BshNI GGYRCC 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 19, 532
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsnI GGCC 1 cut(s) 581
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 565
BspACI CCGC 1 cut(s) 258
BspANI GGCC 1 cut(s) 581
BspCNI CTCAG 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 11, 281
BspPI GGATC 1 cut(s) 573
BspQI GCTCTTC 2 cut(s) 202, 433
BspT107I GGYRCC 1 cut(s) 9
BsrDI GCAATG 1 cut(s) 263
BsrI ACTGG 1 cut(s) 332
BssECI CCNNGG 1 cut(s) 76
BssMI GATC 1 cut(s) 565
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 1 cut(s) 76
Bst2UI CCWGG 2 cut(s) 516, 578
Bst4CI ACNGT 1 cut(s) 217
Bst6I CTCTTC 2 cut(s) 202, 433
BstACI GRCGYC 1 cut(s) 41
BstDEI CTNAG 3 cut(s) 269, 360, 593
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 1 cut(s) 568
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 1 cut(s) 565
BstNI CCWGG 2 cut(s) 516, 578
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 514, 576
Bsu36I CCTNAGG 1 cut(s) 360
BsuRI GGCC 1 cut(s) 581
BtsCI GGATG 1 cut(s) 90
BtsIMutI CAGTG 2 cut(s) 225, 339
Cfr13I GGNCC 2 cut(s) 518, 540
CseI GACGC 1 cut(s) 49
Csp6I GTAC 2 cut(s) 10, 297
CviAII CATG 6 cut(s) 109, 151, 210, 522, 527, 612
CviQI GTAC 2 cut(s) 10, 297
DdeI CTNAG 3 cut(s) 269, 360, 593
DpnI GATC 1 cut(s) 567
DpnII GATC 1 cut(s) 565
EaeI YGGCCR 1 cut(s) 579
Eam1104I CTCTTC 2 cut(s) 202, 433
EarI CTCTTC 2 cut(s) 202, 433
Eco130I CCWWGG 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 197
Eco47I GGWCC 2 cut(s) 518, 540
Eco57I CTGAAG 2 cut(s) 104, 325
Eco81I CCTNAGG 1 cut(s) 360
EcoRII CCWGG 2 cut(s) 514, 576
EcoT14I CCWWGG 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 613
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 76
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 6 cut(s) 112, 154, 213, 525, 530, 615
FatI CATG 6 cut(s) 108, 150, 209, 521, 526, 611
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 258
HaeIII GGCC 1 cut(s) 581
HgaI GACGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 6 cut(s) 112, 154, 213, 525, 530, 615
HinfI GANTC 3 cut(s) 112, 126, 549
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 3 cut(s) 123, 169, 412
Hpy188III TCNNGA 3 cut(s) 142, 359, 553
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 184, 421
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 3 cut(s) 390, 486, 611
HpyF3I CTNAG 3 cut(s) 269, 360, 593
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 6 cut(s) 112, 154, 213, 525, 530, 615
KpnI GGTACC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 565
LguI GCTCTTC 2 cut(s) 202, 433
LmnI GCTCC 2 cut(s) 349, 469
LweI GCATC 2 cut(s) 75, 361
MaeIII GTNAC 1 cut(s) 599
MalI GATC 1 cut(s) 567
MboI GATC 1 cut(s) 565
MboII GAAGA 5 cut(s) 189, 260, 263, 347, 450
MfeI CAATTG 2 cut(s) 45, 391
MhlI GDGCHC 1 cut(s) 197
MlsI TGGCCA 1 cut(s) 581
MluCI AATT 4 cut(s) 45, 391, 417, 474
MluNI TGGCCA 1 cut(s) 581
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 6 cut(s) 75, 138, 355, 484, 531, 555
Mox20I TGGCCA 1 cut(s) 581
Mph1103I ATGCAT 1 cut(s) 613
MscI TGGCCA 1 cut(s) 581
MseI TTAA 3 cut(s) 155, 243, 477
Msp20I TGGCCA 1 cut(s) 581
MspR9I CCNGG 2 cut(s) 516, 578
MunI CAATTG 2 cut(s) 45, 391
MvaI CCWGG 2 cut(s) 516, 578
NdeII GATC 1 cut(s) 565
NlaIII CATG 6 cut(s) 112, 154, 213, 525, 530, 615
NlaIV GGNNCC 2 cut(s) 11, 281
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 1 cut(s) 154
PciI ACATGT 1 cut(s) 150
PciSI GCTCTTC 2 cut(s) 202, 433
PfeI GAWTC 2 cut(s) 126, 549
PflMI CCANNNNNTGG 1 cut(s) 19
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PscI ACATGT 1 cut(s) 150
PsiI TTATAA 1 cut(s) 318
Psp6I CCWGG 2 cut(s) 514, 576
PspGI CCWGG 2 cut(s) 514, 576
PspN4I GGNNCC 2 cut(s) 11, 281
PspPI GGNCC 2 cut(s) 518, 540
RsaI GTAC 2 cut(s) 11, 298
RsaNI GTAC 2 cut(s) 10, 297
SapI GCTCTTC 2 cut(s) 202, 433
SaqAI TTAA 3 cut(s) 155, 243, 477
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 565
Sau96I GGNCC 2 cut(s) 518, 540
ScaI AGTACT 1 cut(s) 298
SchI GAGTC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 516, 578
SduI GDGCHC 1 cut(s) 197
SetI ASST 6 cut(s) 314, 379, 445, 474, 520, 542
SfaNI GCATC 2 cut(s) 75, 361
SinI GGWCC 2 cut(s) 518, 540
Sse9I AATT 4 cut(s) 45, 391, 417, 474
SsiI CCGC 1 cut(s) 258
StyD4I CCNGG 2 cut(s) 514, 576
StyI CCWWGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 217
TasI AATT 4 cut(s) 45, 391, 417, 474
TatI WGTACW 1 cut(s) 296
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 2 cut(s) 126, 549
Tru1I TTAA 3 cut(s) 155, 243, 477
Tru9I TTAA 3 cut(s) 155, 243, 477
TscAI CASTG 2 cut(s) 232, 339
TspDTI ATGAA 2 cut(s) 174, 198
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 2 cut(s) 232, 339
Van91I CCANNNNNTGG 1 cut(s) 19
VpaK11BI GGWCC 2 cut(s) 518, 540
XceI RCATGY 1 cut(s) 154
ZrmI AGTACT 1 cut(s) 298
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.