RchiOBHm_Chr6g0267761

Endoglucanase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0025091
Physical Location & Seq
Forward (+)
24572473 .. 24574574
2102 bp
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UTR
Exon/CDS
Intron
PRQ24017

Sequence Viewer

Length: 222 bp
ATGGCCTTCACAACCACAATGCTGGCGTGGAGTGTCATCGAGTTTGGGGACTCCATGCCTCCCAATGAGCACAGGAATGCGCTGGTTGCCCTGCGTTGGGGGACGGATTACCTCCTCAAAACGGTGTCGCAGCCCAATCGGATTTTCGTACTAGTAAGTTTGTTTATTTATTGGGTTGTTGGGTGTGGTTGGTTTTTCCGTTTTTGTGGGTGGCATAGTTAA

Protein Analysis

73

Amino Acids

8.52

Weight (kDa)

7.85

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 1 - 53 7.5e-12 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025091)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0267761
rosa_multiflora Rmu_sc0004417.1_g000003
rosa_samantha Rh6DG142200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 3 cut(s) 96, 97, 121
AhlI ACTAGT 1 cut(s) 151
AjuI GAANNNNNNNTTGG 2 cut(s) 128, 160
Alw21I GWGCWC 1 cut(s) 72
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 119, 153
BcuI ACTAGT 1 cut(s) 151
BfaI CTAG 1 cut(s) 152
BisI GCNGC 1 cut(s) 131
BlsI GCNGC 1 cut(s) 132
Bsc4I CCNNNNNNNGG 3 cut(s) 96, 97, 121
BseLI CCNNNNNNNGG 3 cut(s) 96, 97, 121
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 72
BslFI GGGAC 2 cut(s) 62, 115
BslI CCNNNNNNNGG 3 cut(s) 96, 97, 121
BsmFI GGGAC 2 cut(s) 62, 115
BsmI GAATGC 1 cut(s) 82
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 72
BspANI GGCC 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 24
BstHHI GCGC 1 cut(s) 82
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 142
BstXI CCANNNNNNTGG 1 cut(s) 22
BsuRI GGCC 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 24
CfoI GCGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 149
CviAII CATG 1 cut(s) 55
CviJI RGCY 2 cut(s) 5, 133
CviKI_1 RGCY 2 cut(s) 5, 133
CviQI GTAC 1 cut(s) 149
FaeI CATG 1 cut(s) 58
FaiI YATR 2 cut(s) 56, 216
FaqI GGGAC 2 cut(s) 62, 115
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 131
FspBI CTAG 1 cut(s) 152
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 131
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 82
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 141
HpyAV CCTTC 1 cut(s) 16
HpyCH4III ACNGT 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 1 cut(s) 80
LpnPI CCDG 4 cut(s) 8, 58, 68, 104
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 1 cut(s) 152
MhlI GDGCHC 1 cut(s) 72
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 3 cut(s) 69, 122, 125
MseI TTAA 1 cut(s) 220
MslI CAYNNNNRTG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 82
MwoI GCNNNNNNNGC 1 cut(s) 86
NlaIII CATG 1 cut(s) 58
PctI GAATGC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 132
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 1 cut(s) 220
SatI GCNGC 1 cut(s) 131
SchI GAGTC 1 cut(s) 44
SduI GDGCHC 1 cut(s) 72
SetI ASST 1 cut(s) 114
SgeI CNNG 8 cut(s) 35, 39, 52, 67, 85, 95, 103, 164
SmiMI CAYNNNNRTG 1 cut(s) 75
SpeI ACTAGT 1 cut(s) 151
SspMI CTAG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 39
Tru1I TTAA 1 cut(s) 220
Tru9I TTAA 1 cut(s) 220
TseI GCWGC 1 cut(s) 130
TspGWI ACGGA 2 cut(s) 119, 188
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.