Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004417.1

Orthogroup ID

OG0025091

Physical Location & Seq

Genomic Coordinates Forward (+)

13639 .. 14121

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004417.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgaaacccatgactcatttcctctccctccttcttctcctactctgcctcctcgccaccatccacggcggagggcacgactaccaagacgcattgtcgaaatgcatactctttttcgagggccagaggtcgggggttctgcctcaggaccaacgccagtcgtggcgggctaattccgggttgagtgatggctggacttacaacactgacctcaccggcggctactacgacgcaggagacaacgtcaagttcgggttcccgatggccttcacgaccacaatgctggcgtggagtgtcatcgagtttggggactccatgcctcccaatgagcacaggaatgcgctggttgccctgcgttgggggacggattacctcctcaaaacggtgtcgcagcccaatcggattttcgtacaagtaagtttgtttatttattgggttgttgggtgtggttggtttttccgtttttgtgggtggcatagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

160

Amino Acids

18.19

Weight (kDa)

6.49

Isoelectric Point (pI)

40.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025091)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267761
rosa_multiflora	Rmu_sc0004417.1_g000003
rosa_samantha	Rh6DG142200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	69, 166, 219
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	4 cut(s)	130, 357, 358, 382
AhdI	GACNNNNNGTC	1 cut(s)	94
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
Alw21I	GWGCWC	1 cut(s)	333
Alw26I	GTCTC	1 cut(s)	231
AoxI	GGCC	2 cut(s)	121, 264
ApeKI	GCWGC	1 cut(s)	391
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	2 cut(s)	121, 148
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	148
AxyI	CCTNAGG	1 cut(s)	144
BaeGI	GKGCMC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	403
BccI	CCATC	3 cut(s)	68, 182, 256
BceAI	ACGGC	1 cut(s)	82
BcgI	CGANNNNNNTGC	4 cut(s)	262, 296, 380, 414
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	231
BisI	GCNGC	2 cut(s)	220, 392
BlsI	GCNGC	2 cut(s)	221, 393
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	148
BmeRI	GACNNNNNGTC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	121, 148
BmiI	GGNNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	64
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 228, 258
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 357, 358, 382
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	157
Bse21I	CCTNAGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	4 cut(s)	130, 357, 358, 382
BseMII	CTCAG	1 cut(s)	158
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	41, 365
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	403
BshFI	GGCC	2 cut(s)	123, 266
BsiHKAI	GWGCWC	1 cut(s)	333
BsiSI	CCGG	2 cut(s)	177, 216
BslFI	GGGAC	2 cut(s)	323, 376
BslI	CCNNNNNNNGG	4 cut(s)	130, 357, 358, 382
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	323, 376
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	123, 266
Bsp1286I	GDGCHC	2 cut(s)	78, 333
BspACI	CCGC	3 cut(s)	69, 166, 219
BspANI	GGCC	2 cut(s)	123, 266
BspCNI	CTCAG	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	64
Bst4CI	ACNGT	1 cut(s)	385
BstC8I	GCNNGC	2 cut(s)	168, 285
BstDEI	CTNAG	1 cut(s)	144
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	1 cut(s)	60
BstHHI	GCGC	1 cut(s)	343
BstMAI	GTCTC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	176
BstSLI	GKGCMC	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	403
BstXI	CCANNNNNNTGG	1 cut(s)	283
Bsu36I	CCTNAGG	1 cut(s)	144
BsuRI	GGCC	2 cut(s)	123, 266
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	168, 285
CfoI	GCGC	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	2 cut(s)	121, 148
CseI	GACGC	2 cut(s)	98, 239
Csp6I	GTAC	1 cut(s)	410
CviAII	CATG	2 cut(s)	10, 316
CviJI	RGCY	6 cut(s)	123, 170, 192, 222, 266, 394
CviKI_1	RGCY	6 cut(s)	123, 170, 192, 222, 266, 394
CviQI	GTAC	1 cut(s)	410
DdeI	CTNAG	1 cut(s)	144
DriI	GACNNNNNGTC	1 cut(s)	94
Eam1105I	GACNNNNNGTC	1 cut(s)	94
EciI	GGCGGA	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	148
Eco81I	CCTNAGG	1 cut(s)	144
EcoT22I	ATGCAT	1 cut(s)	107
FaeI	CATG	2 cut(s)	13, 319
FaiI	YATR	4 cut(s)	11, 107, 317, 477
FaqI	GGGAC	2 cut(s)	323, 376
FatI	CATG	2 cut(s)	9, 315
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	220, 392
FokI	GGATG	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	220, 392
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	2 cut(s)	220, 392
HaeIII	GGCC	2 cut(s)	123, 266
HapII	CCGG	2 cut(s)	177, 216
HgaI	GACGC	2 cut(s)	98, 239
HhaI	GCGC	1 cut(s)	343
Hin1II	CATG	2 cut(s)	13, 319
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HinfI	GANTC	2 cut(s)	13, 311
HpaII	CCGG	2 cut(s)	177, 216
HphI	GGTGA	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	3 cut(s)	146, 259, 271
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	41, 277
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	13, 319
HspAI	GCGC	1 cut(s)	341
Lsp1109I	GCAGC	1 cut(s)	403
MaeII	ACGT	1 cut(s)	243
MboII	GAAGA	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	78, 333
MluCI	AATT	1 cut(s)	172
MlyI	GAGTC	2 cut(s)	7, 305
Mph1103I	ATGCAT	1 cut(s)	107
MseI	TTAA	1 cut(s)	481
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	2 cut(s)	177, 216
MspR9I	CCNGG	1 cut(s)	178
Mva1269I	GAATGC	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	347
NciI	CCSGG	1 cut(s)	178
NlaIII	CATG	2 cut(s)	13, 319
NlaIV	GGNNCC	1 cut(s)	257
NsiI	ATGCAT	1 cut(s)	107
PctI	GAATGC	1 cut(s)	343
PflFI	GACNNNGTC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	221, 393
PleI	GAGTC	2 cut(s)	7, 305
PpsI	GAGTC	2 cut(s)	7, 305
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	2 cut(s)	121, 148
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	481
SatI	GCNGC	2 cut(s)	220, 392
Sau96I	GGNCC	2 cut(s)	121, 148
SchI	GAGTC	2 cut(s)	7, 305
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	2 cut(s)	78, 333
SetI	ASST	4 cut(s)	131, 213, 246, 375
SgrAI	CRCCGGYG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	336
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	3 cut(s)	69, 166, 219
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	3 cut(s)	98, 117, 300
TasI	AATT	1 cut(s)	172
TauI	GCSGC	1 cut(s)	222
Tru1I	TTAA	1 cut(s)	481
Tru9I	TTAA	1 cut(s)	481
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	380, 449
TspRI	CASTG	1 cut(s)	211
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.