Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0025091

Physical Location & Seq

Genomic Coordinates Forward (+)

20408784 .. 20418378

Gene Structure 9595 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG142200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCCTCCCAATGAGCACAGGAATGCGCTGGTTGCCCTTCGTTGGGGGACGGATTATCTCCTCAAAACGGTGTCGCAGCCCAATCGGATTTTCGTACAAGACGAATTGCTATGGAGTGCAGCCTGGCTGAGGAGAGTCACTCAGGATGGTGGTTACCTTGACTACATACAAAACAATGGCAAAACTCTTGGTGCAGAGGACAATATAAACGAATTTGGCTGGGACAACAAGCATGCTGGCCTCAATGTTCTAATCTCCAAGAAGAGCAGAAAAGTTGAAGCTGCCATGAACATGGATTATGGCACCAAGGTTGTTACCCAGATAGGAAGAGAAACCAAGGGCCAAAAGAGCGACATAGAGAAGCATACGTTCCTGCAACAAAAAGATCAGCAATTGTTTCTTTTATTAGTACAAGAATTTATATACAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0008150 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009900 GO:0009987 GO:0010047 GO:0010154 GO:0016043 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0042545 GO:0045229 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0061458 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:1990059

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_9

Protein Analysis

144

Amino Acids

16.64

Weight (kDa)

8.8

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_9	PF00759	33 - 93	6.3e-12	Glycosyl hydrolase family 9

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025091)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0267761
rosa_multiflora	Rmu_sc0004417.1_g000003
rosa_samantha	Rh6DG142200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AcsI	RAATTY	2 cut(s)	212, 416
AfaI	GTAC	2 cut(s)	96, 411
AfiI	CCNNNNNNNGG	4 cut(s)	42, 43, 67, 129
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	122
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	1 cut(s)	281
AluI	AGCT	1 cut(s)	281
Alw21I	GWGCWC	1 cut(s)	18
AoxI	GGCC	2 cut(s)	238, 340
ApeKI	GCWGC	3 cut(s)	76, 119, 281
ApoI	RAATTY	2 cut(s)	212, 416
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	128
BbvI	GCAGC	3 cut(s)	88, 131, 268
BccI	CCATC	1 cut(s)	140
BcgI	CGANNNNNNTGC	2 cut(s)	65, 99
BciT130I	CCWGG	1 cut(s)	124
BisI	GCNGC	3 cut(s)	77, 120, 282
BlsI	GCNGC	3 cut(s)	78, 121, 283
Bme1390I	CCNGG	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	340
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	124
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
Bpu10I	CCTNAGC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 43, 67, 129
BseBI	CCWGG	1 cut(s)	124
BseDI	CCNNGG	2 cut(s)	306, 336
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	4 cut(s)	42, 43, 67, 129
BseMII	CTCAG	2 cut(s)	119, 155
BseRI	GAGGAG	2 cut(s)	50, 145
BseXI	GCAGC	3 cut(s)	88, 131, 268
BseYI	CCCAGC	1 cut(s)	219
BsgI	GTGCAG	2 cut(s)	138, 213
BshFI	GGCC	2 cut(s)	240, 342
BshNI	GGYRCC	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	18
BslFI	GGGAC	2 cut(s)	61, 236
BslI	CCNNNNNNNGG	4 cut(s)	42, 43, 67, 129
BsmFI	GGGAC	2 cut(s)	61, 236
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	240, 342
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	1 cut(s)	385
BspANI	GGCC	2 cut(s)	240, 342
BspCNI	CTCAG	2 cut(s)	120, 154
BspLI	GGNNCC	1 cut(s)	304
BspQI	GCTCTTC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	306, 336
BssMI	GATC	1 cut(s)	385
BssT1I	CCWWGG	2 cut(s)	306, 336
Bst2UI	CCWGG	1 cut(s)	124
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	2 cut(s)	257, 322
BstC8I	GCNNGC	2 cut(s)	234, 238
BstDEI	CTNAG	2 cut(s)	128, 141
BstEII	GGTNACC	1 cut(s)	152
BstENI	CCTNNNNNAGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 348
BstNI	CCWGG	1 cut(s)	124
BstNSI	RCATGY	1 cut(s)	236
BstPI	GGTNACC	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	122
BstV1I	GCAGC	3 cut(s)	88, 131, 268
BstXI	CCANNNNNNTGG	1 cut(s)	292
BsuRI	GGCC	2 cut(s)	240, 342
BtsCI	GGATG	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	234, 238
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	95, 410
CviAII	CATG	3 cut(s)	233, 286, 292
CviJI	RGCY	7 cut(s)	79, 122, 127, 219, 240, 281, 342
CviKI_1	RGCY	7 cut(s)	79, 122, 127, 219, 240, 281, 342
CviQI	GTAC	2 cut(s)	95, 410
DdeI	CTNAG	2 cut(s)	128, 141
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
Eam1104I	CTCTTC	2 cut(s)	257, 322
EarI	CTCTTC	2 cut(s)	257, 322
Eco130I	CCWWGG	2 cut(s)	306, 336
Eco91I	GGTNACC	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	122
EcoT14I	CCWWGG	2 cut(s)	306, 336
ErhI	CCWWGG	2 cut(s)	306, 336
FaeI	CATG	3 cut(s)	236, 289, 295
FaqI	GGGAC	2 cut(s)	61, 236
FatI	CATG	3 cut(s)	232, 285, 291
Fnu4HI	GCNGC	3 cut(s)	77, 120, 282
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	3 cut(s)	77, 120, 282
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	3 cut(s)	77, 120, 282
GsaI	CCCAGC	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	240, 342
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	236, 289, 295
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	3 cut(s)	119, 194, 376
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 348
HpyF3I	CTNAG	2 cut(s)	128, 141
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	3 cut(s)	236, 289, 295
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	385
LguI	GCTCTTC	1 cut(s)	257
LpnPI	CCDG	9 cut(s)	4, 14, 109, 128, 136, 205, 222, 332, 386
Lsp1109I	GCAGC	3 cut(s)	88, 131, 268
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	3 cut(s)	136, 152, 313
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	2 cut(s)	274, 339
MfeI	CAATTG	1 cut(s)	392
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	4 cut(s)	104, 212, 392, 416
MlyI	GAGTC	1 cut(s)	144
MnlI	CCTC	5 cut(s)	15, 71, 123, 190, 251
MslI	CAYNNNNRTG	2 cut(s)	21, 290
MspR9I	CCNGG	1 cut(s)	124
MunI	CAATTG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	32, 348
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	3 cut(s)	236, 289, 295
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PctI	GAATGC	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	78, 121, 283
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	122
PspEI	GGTNACC	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	122
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	340
RsaI	GTAC	2 cut(s)	96, 411
RsaNI	GTAC	2 cut(s)	95, 410
RseI	CAYNNNNRTG	2 cut(s)	21, 290
SapI	GCTCTTC	1 cut(s)	257
SatI	GCNGC	3 cut(s)	77, 120, 282
Sau3AI	GATC	1 cut(s)	385
Sau96I	GGNCC	1 cut(s)	340
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	124
SduI	GDGCHC	1 cut(s)	18
SetI	ASST	4 cut(s)	159, 283, 312, 371
SmiMI	CAYNNNNRTG	2 cut(s)	21, 290
SphI	GCATGC	1 cut(s)	236
Sse9I	AATT	4 cut(s)	104, 212, 392, 416
StyD4I	CCNGG	1 cut(s)	122
StyI	CCWWGG	2 cut(s)	306, 336
TaaI	ACNGT	1 cut(s)	70
TaiI	ACGT	1 cut(s)	371
TasI	AATT	4 cut(s)	104, 212, 392, 416
TatI	WGTACW	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	3 cut(s)	76, 119, 281
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	302
TspGWI	ACGGA	1 cut(s)	65
XagI	CCTNNNNNAGG	1 cut(s)	127
XapI	RAATTY	2 cut(s)	212, 416
XceI	RCATGY	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.