Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024239

Physical Location & Seq

Genomic Coordinates Forward (+)

32979927 .. 32980100

Gene Structure 174 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24457

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGAATATGATCATCAGTGAGTCTCTAAGGTTATATCCTCCTGTTATTCAACTTGTAAAGAAAGCTGAAAGGGAAAGTAGGCTGGGGAAGTTGATTGTTCCTACTAATATTGATTCGGTCATCCCAATTGTAGCACTTCACCATGACCCTCAAATATGGGGACAAGACGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

57

Amino Acids

6.44

Weight (kDa)

6.71

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	1 - 53	2.8e-09	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024239)

Species	Orthologous Gene IDs
malus_domestica	MD13G1057600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0272611
rosa_multiflora	Rmu_sc0003080.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	170
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	50
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	131
BclI	TGATCA	1 cut(s)	9
BcoDI	GTCTC	1 cut(s)	27
BseGI	GGATG	1 cut(s)	120
BseYI	CCCAGC	1 cut(s)	82
Bsh1236I	CGCG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	9
BspFNI	CGCG	1 cut(s)	170
BssMI	GATC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	120
BstFNI	CGCG	1 cut(s)	170
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	9
BstUI	CGCG	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	22
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	2 cut(s)	65, 82
CviKI_1	RGCY	2 cut(s)	65, 82
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
FaeI	CATG	1 cut(s)	146
FaiI	YATR	4 cut(s)	8, 34, 144, 157
FatI	CATG	1 cut(s)	142
FbaI	TGATCA	1 cut(s)	9
FokI	GGATG	1 cut(s)	107
GsaI	CCCAGC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	146
HinfI	GANTC	2 cut(s)	20, 113
HphI	GGTGA	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	146
Ksp22I	TGATCA	1 cut(s)	9
Kzo9I	GATC	1 cut(s)	9
LpnPI	CCDG	2 cut(s)	54, 68
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MfeI	CAATTG	1 cut(s)	126
MluCI	AATT	1 cut(s)	126
MluI	ACGCGT	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	2 cut(s)	48, 159
MunI	CAATTG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	170
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	113
PleI	GAGTC	1 cut(s)	28
PpsI	GAGTC	1 cut(s)	28
PspFI	CCCAGC	1 cut(s)	82
Sau3AI	GATC	1 cut(s)	9
SchI	GAGTC	1 cut(s)	29
SetI	ASST	2 cut(s)	32, 67
SgeI	CNNG	4 cut(s)	53, 65, 95, 155
Sse9I	AATT	1 cut(s)	126
SspI	AATATT	1 cut(s)	109
TaqII	GACCGA	1 cut(s)	106
TasI	AATT	1 cut(s)	126
TfiI	GAWTC	1 cut(s)	113
TscAI	CASTG	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.