Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003080.1

Orthogroup ID

OG0024239

Physical Location & Seq

Genomic Coordinates Reverse (-)

8994 .. 9272

Gene Structure 279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003080.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

atgatcatcaatgagtctctaaggttatatcctcctgttattcaacttgtaaagaaagctgaaagggaaagtaggttggggaagttgattgttcctactaatattgatttggtcatcccaattgtagcacttcaccatgaccctcaaatatggggacaagacgcggaacttttcaaacaagagcagttctcagaaagggttgctaaagctactaaggataacatggctgtattcataccctttggaatgggacctagaatttgtgtgggtctcaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

92

Amino Acids

10.41

Weight (kDa)

7.92

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0024239)

Species	Orthologous Gene IDs
malus_domestica	MD13G1057600.v1.1
rosa_chinensis	RchiOBHm_Chr6g0272611
rosa_multiflora	Rmu_sc0003080.1_g000002

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	164
AciI	CCGC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	258
AgsI	TTSAA	2 cut(s)	44, 175
AluBI	AGCT	2 cut(s)	59, 209
AluI	AGCT	2 cut(s)	59, 209
Alw26I	GTCTC	2 cut(s)	21, 275
ApoI	RAATTY	1 cut(s)	258
ArsI	GACNNNNNNTTYG	2 cut(s)	243, 275
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	251
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	21, 275
BfaI	CTAG	2 cut(s)	255, 277
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	252
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BsaI	GGTCTC	1 cut(s)	275
BseGI	GGATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	164
BslFI	GGGAC	2 cut(s)	168, 264
BsmAI	GTCTC	2 cut(s)	21, 275
BsmFI	GGGAC	2 cut(s)	168, 264
Bso31I	GGTCTC	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	1 cut(s)	164
BspCNI	CTCAG	1 cut(s)	203
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	252
BspTNI	GGTCTC	1 cut(s)	275
BssMI	GATC	1 cut(s)	3
BstDEI	CTNAG	3 cut(s)	20, 190, 213
BstF5I	GGATG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	21, 275
BstMBI	GATC	1 cut(s)	3
BstUI	CGCG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	114
Cfr13I	GGNCC	1 cut(s)	251
CseI	GACGC	1 cut(s)	170
CviAII	CATG	2 cut(s)	137, 223
CviJI	RGCY	3 cut(s)	59, 209, 227
CviKI_1	RGCY	3 cut(s)	59, 209, 227
DdeI	CTNAG	3 cut(s)	20, 190, 213
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	251
EcoO109I	RGGNCCY	1 cut(s)	251
FaeI	CATG	2 cut(s)	140, 226
FaiI	YATR	5 cut(s)	28, 138, 151, 224, 236
FaqI	GGGAC	2 cut(s)	168, 264
FatI	CATG	2 cut(s)	136, 222
FbaI	TGATCA	1 cut(s)	3
FokI	GGATG	1 cut(s)	101
FspBI	CTAG	2 cut(s)	255, 277
HgaI	GACGC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	140, 226
HinfI	GANTC	1 cut(s)	14
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	193
HpyF3I	CTNAG	3 cut(s)	20, 190, 213
Hsp92II	CATG	2 cut(s)	140, 226
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	1 cut(s)	48
MaeI	CTAG	2 cut(s)	255, 277
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MfeI	CAATTG	1 cut(s)	120
MluCI	AATT	2 cut(s)	120, 258
MlyI	GAGTC	1 cut(s)	23
MnlI	CCTC	2 cut(s)	42, 153
MunI	CAATTG	1 cut(s)	120
MvnI	CGCG	1 cut(s)	164
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	140, 226
NlaIV	GGNNCC	1 cut(s)	252
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
PpuMI	RGGWCCY	1 cut(s)	251
Psp5II	RGGWCCY	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	251
PspPPI	RGGWCCY	1 cut(s)	251
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	23
SetI	ASST	5 cut(s)	26, 61, 77, 211, 256
SgeI	CNNG	8 cut(s)	47, 59, 149, 170, 175, 191, 235, 267
SinI	GGWCC	1 cut(s)	251
Sse9I	AATT	2 cut(s)	120, 258
SsiI	CCGC	1 cut(s)	164
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	2 cut(s)	255, 277
TasI	AATT	2 cut(s)	120, 258
TspDTI	ATGAA	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	258
XspI	CTAG	2 cut(s)	255, 277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.