Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025090

Physical Location & Seq

Genomic Coordinates Reverse (-)

45090746 .. 45091157

Gene Structure 412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25271

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCTCCTCCGTCAGAGAATCATCTTCTTGGGTTCTCAGGTGGATGATATGGCGGCGGATTTGATAATAAGCCAACTGCTATTTCTGGATGCTGAAAACCCTAAAAAGGACATTACATTGTTTATCAATTTGCCTGGTGGCTCGGTTCTCCTCCTTCAATCCACTCAAGTCCCTCTCCCCCTTCAGTCCATTACCCGGTGCCCTTCATCCCTGTCTTATCCAGCAACTTATCCACCAAAAACCCATCCACCAAATTGTCTCTCACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

89

Amino Acids

9.77

Weight (kDa)

6.51

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	1 - 49	2e-15	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0025090)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0281751
rosa_samantha	Rh6CG258000 Rh6DG250100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	198
AciI	CCGC	2 cut(s)	53, 56
AcuI	CTGAAG	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	106, 195
AgsI	TTSAA	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	133
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
Alw26I	GTCTC	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	255
BaeGI	GKGCMC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	198
BccI	CCATC	1 cut(s)	252
BciT130I	CCWGG	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bme1390I	CCNGG	2 cut(s)	135, 196
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	2 cut(s)	135, 196
BmsI	GCATC	1 cut(s)	79
BpuEI	CTTGAG	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 195
BseBI	CCWGG	1 cut(s)	135
BseGI	GGATG	4 cut(s)	49, 94, 206, 244
BseLI	CCNNNNNNNGG	2 cut(s)	106, 195
BseMII	CTCAG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	203
BshNI	GGYRCC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	106, 195
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	203
BspACI	CCGC	2 cut(s)	53, 56
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	135
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	4 cut(s)	49, 94, 206, 244
BstMAI	GTCTC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	2 cut(s)	133, 194
BstSLI	GKGCMC	1 cut(s)	203
BtsCI	GGATG	4 cut(s)	49, 94, 206, 244
CviJI	RGCY	2 cut(s)	72, 141
CviKI_1	RGCY	2 cut(s)	72, 141
DdeI	CTNAG	1 cut(s)	36
EciI	GGCGGA	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	133
FaiI	YATR	1 cut(s)	50
FaqI	GGGAC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	54
FokI	GGATG	4 cut(s)	56, 101, 193, 231
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
HapII	CCGG	1 cut(s)	196
HinfI	GANTC	1 cut(s)	18
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	1 cut(s)	255
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	86
HpyAV	CCTTC	3 cut(s)	164, 191, 213
HpyF3I	CTNAG	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	7 cut(s)	23, 71, 120, 147, 209, 224, 234
LweI	GCATC	1 cut(s)	79
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	2 cut(s)	127, 253
MnlI	CCTC	3 cut(s)	17, 161, 183
MseI	TTAA	1 cut(s)	268
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	135, 196
MvaI	CCWGG	1 cut(s)	135
NciI	CCSGG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	18
PkrI	GCNGC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	133
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	268
SatI	GCNGC	1 cut(s)	54
ScrFI	CCNGG	2 cut(s)	135, 196
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	2 cut(s)	42, 268
SfaNI	GCATC	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	2 cut(s)	127, 253
SsiI	CCGC	2 cut(s)	53, 56
StyD4I	CCNGG	2 cut(s)	133, 194
TasI	AATT	2 cut(s)	127, 253
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	268
Tru9I	TTAA	1 cut(s)	268
TspDTI	ATGAA	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.