Rh6CG258000

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0025090
Physical Location & Seq
Reverse (-)
43003209 .. 43003989
781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG258000.1

Sequence Viewer

Length: 462 bp
ATGGTCTTCATAGCACTAGCGCTTCTAGTATCATCGATTGTAGCACAACAACAAGGAGGAAGCGCGTCAGTCTGGTTAAAGCCTCATTGCCTACAAGACCCACTTTGTCCAACAATTGGGATTTTCAGTTCGCCGCCTACTACTACTACTTCAGCTCCACGTGTCCCTAGATTCGAAGAGCTCAATACAACCAACATGCTCCTCCGTCAGAGAATCATCTTCTTGGGTTCGCAGGTGGATGATATGACGGCGGATTTGATAATAAGCCAACTGCTATATCTGGATGTTGAAGACCCTAAAAAGGACATTACATTGTTTATCAATTTGCCTGGCTCGGTTCTCCTCCTTCAATCCACTCAAGTCCCTCTCCTCCTTCAGTCCATTACCCGGTGCCCTTCATCCCTGTCTTATCCAGCAACTTATCCACCAAAAACCCATCCGCCAAATTGTCTCTCACCTTAA

Protein Analysis

153

Amino Acids

16.73

Weight (kDa)

6.03

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 62 - 111 1.1e-13 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025090)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0281751
rosa_samantha Rh6CG258000 Rh6DG250100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 223
Acc36I ACCTGC 1 cut(s) 223
AccB1I GGYRCC 1 cut(s) 390
AccB7I CCANNNNNTGG 1 cut(s) 116
AccII CGCG 1 cut(s) 65
AciI CCGC 3 cut(s) 134, 251, 440
AcuI CTGAAG 2 cut(s) 135, 359
AcvI CACGTG 1 cut(s) 161
AfeI AGCGCT 1 cut(s) 21
AfiI CCNNNNNNNGG 3 cut(s) 116, 301, 387
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 2 cut(s) 290, 350
AjnI CCWGG 1 cut(s) 328
AloI GAACNNNNNNTCC 2 cut(s) 112, 144
AluBI AGCT 2 cut(s) 155, 181
AluI AGCT 2 cut(s) 155, 181
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 1 cut(s) 455
Aor51HI AGCGCT 1 cut(s) 21
ArsI GACNNNNNNTTYG 2 cut(s) 238, 270
AspLEI GCGC 2 cut(s) 22, 65
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 1 cut(s) 447
AsuII TTCGAA 1 cut(s) 174
BaeGI GKGCMC 1 cut(s) 395
BanI GGYRCC 1 cut(s) 390
BanII GRGCYC 1 cut(s) 183
BbrPI CACGTG 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 183
BccI CCATC 1 cut(s) 444
BceAI ACGGC 1 cut(s) 264
BciT130I CCWGG 1 cut(s) 330
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 3 cut(s) 17, 26, 168
BfoI RGCGCY 1 cut(s) 23
BfuAI ACCTGC 1 cut(s) 223
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 2 cut(s) 330, 388
BmiI GGNNCC 1 cut(s) 392
BmrFI CCNGG 2 cut(s) 330, 388
BpiI GAAGAC 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 388
Bsa29I ATCGAT 1 cut(s) 35
BsaAI YACGTR 1 cut(s) 161
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 301, 387
Bse3DI GCAATG 1 cut(s) 85
BseBI CCWGG 1 cut(s) 330
BseCI ATCGAT 1 cut(s) 35
BseGI GGATG 4 cut(s) 244, 289, 398, 436
BseLI CCNNNNNNNGG 3 cut(s) 116, 301, 387
BseMI GCAATG 1 cut(s) 85
BseRI GAGGAG 3 cut(s) 191, 332, 359
BseSI GKGCMC 1 cut(s) 395
Bsh1236I CGCG 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 390
BshVI ATCGAT 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 388
BslFI GGGAC 2 cut(s) 149, 347
BslI CCNNNNNNNGG 3 cut(s) 116, 301, 387
BsmAI GTCTC 1 cut(s) 455
BsmFI GGGAC 2 cut(s) 149, 347
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 2 cut(s) 183, 395
BspACI CCGC 3 cut(s) 134, 251, 440
BspDI ATCGAT 1 cut(s) 35
BspFNI CGCG 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 392
BspMI ACCTGC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 390
BsrDI GCAATG 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 330
Bst6I CTCTTC 1 cut(s) 171
BstBAI YACGTR 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 174
BstF5I GGATG 4 cut(s) 244, 289, 398, 436
BstFNI CGCG 1 cut(s) 65
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 22, 65
BstMAI GTCTC 1 cut(s) 455
BstNI CCWGG 1 cut(s) 330
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 328, 386
BstSLI GKGCMC 1 cut(s) 395
BstUI CGCG 1 cut(s) 65
BstV2I GAAGAC 1 cut(s) 297
Bsu15I ATCGAT 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 35
BtsCI GGATG 4 cut(s) 244, 289, 398, 436
BveI ACCTGC 1 cut(s) 223
CfoI GCGC 2 cut(s) 22, 65
ClaI ATCGAT 1 cut(s) 35
CseI GACGC 1 cut(s) 54
CviAII CATG 1 cut(s) 196
CviJI RGCY 5 cut(s) 82, 155, 181, 267, 333
CviKI_1 RGCY 5 cut(s) 82, 155, 181, 267, 333
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
EciI GGCGGA 2 cut(s) 266, 429
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 183
Eco47III AGCGCT 1 cut(s) 21
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 2 cut(s) 135, 359
Eco72I CACGTG 1 cut(s) 161
EcoICRI GAGCTC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 328
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 1 cut(s) 199
FaiI YATR 4 cut(s) 11, 197, 245, 277
FalI AAGNNNNNCTT 2 cut(s) 87, 119
FaqI GGGAC 2 cut(s) 149, 347
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 4 cut(s) 251, 296, 385, 423
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 3 cut(s) 17, 26, 168
GlaI GCGC 2 cut(s) 21, 64
GluI GCNGC 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 23
HapII CCGG 1 cut(s) 388
HgaI GACGC 1 cut(s) 54
HhaI GCGC 2 cut(s) 22, 65
Hin1II CATG 1 cut(s) 199
Hin6I GCGC 2 cut(s) 20, 63
HinP1I GCGC 2 cut(s) 20, 63
HinfI GANTC 2 cut(s) 171, 213
HpaII CCGG 1 cut(s) 388
HphI GGTGA 1 cut(s) 447
Hpy188I TCNGA 1 cut(s) 210
Hpy188III TCNNGA 1 cut(s) 281
HpyAV CCTTC 3 cut(s) 356, 383, 405
HpyCH4IV ACGT 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 1 cut(s) 199
HspAI GCGC 2 cut(s) 20, 63
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 2 cut(s) 160, 204
LpnPI CCDG 8 cut(s) 58, 218, 266, 315, 342, 401, 416, 426
MaeI CTAG 3 cut(s) 17, 26, 168
MaeII ACGT 1 cut(s) 160
MboII GAAGA 3 cut(s) 188, 211, 302
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 2 cut(s) 183, 395
MluCI AATT 3 cut(s) 114, 322, 445
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 6 cut(s) 50, 93, 212, 353, 375, 380
MseI TTAA 2 cut(s) 77, 460
MspI CCGG 1 cut(s) 388
MspR9I CCNGG 2 cut(s) 330, 388
MunI CAATTG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 65
NciI CCSGG 1 cut(s) 388
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 1 cut(s) 392
NspI RCATGY 1 cut(s) 199
NspV TTCGAA 1 cut(s) 174
PaqCI CACCTGC 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 171
PfeI GAWTC 2 cut(s) 171, 213
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 1 cut(s) 135
PmaCI CACGTG 1 cut(s) 161
PmlI CACGTG 1 cut(s) 161
Ppu21I YACGTR 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 328
PspCI CACGTG 1 cut(s) 161
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 1 cut(s) 392
SacI GAGCTC 1 cut(s) 183
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 2 cut(s) 77, 460
SatI GCNGC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 330, 388
SduI GDGCHC 2 cut(s) 183, 395
SetI ASST 5 cut(s) 157, 163, 183, 237, 460
SfuI TTCGAA 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 3 cut(s) 114, 322, 445
SsiI CCGC 3 cut(s) 134, 251, 440
SspMI CTAG 3 cut(s) 17, 26, 168
SstI GAGCTC 1 cut(s) 183
StyD4I CCNGG 2 cut(s) 328, 386
TaiI ACGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 35, 174
TasI AATT 3 cut(s) 114, 322, 445
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 2 cut(s) 171, 213
Tru1I TTAA 2 cut(s) 77, 460
Tru9I TTAA 2 cut(s) 77, 460
TspDTI ATGAA 1 cut(s) 387
TspGWI ACGGA 1 cut(s) 194
Van91I CCANNNNNTGG 1 cut(s) 116
XceI RCATGY 1 cut(s) 199
XspI CTAG 3 cut(s) 17, 26, 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.