Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0025090

Physical Location & Seq

Genomic Coordinates Reverse (-)

43831113 .. 43832510

Gene Structure 1398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG250100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGTCTTAATAGCACTAGCGCTTCTAGTATCATCGATTGCAGCACAACAAGGAGGAAGCGCGTCGGTCTGGTTAAAGCCTCATTGCCTACAAGACCCACCTTGTCCAGCAATTGGGATTTTCAGTTCGCTGCCTACTACTACTACTTCAGCTCCACGCGTCCCCAGATTCGAAGAGCTCAATACAACCAACATGCTCCTCCGTCAGAGAATCATCTTCTTGGGTTCTCAGGTGGATGATATGGCGGCGGATTTGATAATAAGCCAACTGCTATTTCTGGATGCTGAAAACCCTAAAAAGGACATTACATTGTTTATCAATTTGCCTGGTGGCTCGGTTCTCCTCCTTCAATCCACTCAAGTCCCTCTCCCCCTTCAGTCCATTACCCGGTGCCCTTCATCCCTGTCTTATCCAGCAACTTATCCACCAAAAACCCATCCACCAAATTGTCTCTCACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

153

Amino Acids

16.47

Weight (kDa)

6.7

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	61 - 113	5e-16	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0025090)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0281751
rosa_samantha	Rh6CG258000 Rh6DG250100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	390
AccB7I	CCANNNNNTGG	1 cut(s)	113
AccII	CGCG	2 cut(s)	62, 159
AciI	CCGC	2 cut(s)	245, 248
AcuI	CTGAAG	2 cut(s)	132, 359
AfeI	AGCGCT	1 cut(s)	21
AfiI	CCNNNNNNNGG	3 cut(s)	113, 298, 387
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	2 cut(s)	258, 290
AloI	GAACNNNNNNTCC	2 cut(s)	109, 141
AluBI	AGCT	2 cut(s)	152, 178
AluI	AGCT	2 cut(s)	152, 178
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	455
Aor51HI	AGCGCT	1 cut(s)	21
ApeKI	GCWGC	2 cut(s)	41, 130
AspLEI	GCGC	2 cut(s)	22, 62
AsuC2I	CCSGG	1 cut(s)	388
AsuHPI	GGTGA	1 cut(s)	447
AsuII	TTCGAA	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	180
BbvI	GCAGC	2 cut(s)	53, 117
BccI	CCATC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	327
BcnI	CCSGG	1 cut(s)	388
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	2 cut(s)	17, 26
BfoI	RGCGCY	1 cut(s)	23
BisI	GCNGC	3 cut(s)	42, 131, 246
BlsI	GCNGC	3 cut(s)	43, 132, 247
Bme1390I	CCNGG	2 cut(s)	327, 388
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	2 cut(s)	327, 388
BmsI	GCATC	1 cut(s)	271
Bpu14I	TTCGAA	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	388
Bsa29I	ATCGAT	1 cut(s)	35
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 298, 387
Bse3DI	GCAATG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	35
BseGI	GGATG	4 cut(s)	241, 286, 398, 436
BseLI	CCNNNNNNNGG	3 cut(s)	113, 298, 387
BseMI	GCAATG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	242
BseRI	GAGGAG	2 cut(s)	188, 332
BseSI	GKGCMC	1 cut(s)	395
BseXI	GCAGC	2 cut(s)	53, 117
Bsh1236I	CGCG	2 cut(s)	62, 159
BshNI	GGYRCC	1 cut(s)	390
BshVI	ATCGAT	1 cut(s)	35
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	388
BslFI	GGGAC	2 cut(s)	146, 347
BslI	CCNNNNNNNGG	3 cut(s)	113, 298, 387
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	2 cut(s)	146, 347
Bsp119I	TTCGAA	1 cut(s)	171
Bsp1286I	GDGCHC	2 cut(s)	180, 395
BspACI	CCGC	2 cut(s)	245, 248
BspCNI	CTCAG	1 cut(s)	241
BspDI	ATCGAT	1 cut(s)	35
BspFNI	CGCG	2 cut(s)	62, 159
BspLI	GGNNCC	1 cut(s)	392
BspQI	GCTCTTC	1 cut(s)	168
BspT104I	TTCGAA	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	327
Bst6I	CTCTTC	1 cut(s)	168
BstBI	TTCGAA	1 cut(s)	171
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	4 cut(s)	241, 286, 398, 436
BstFNI	CGCG	2 cut(s)	62, 159
BstH2I	RGCGCY	1 cut(s)	23
BstHHI	GCGC	2 cut(s)	22, 62
BstMAI	GTCTC	1 cut(s)	455
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	325, 386
BstSLI	GKGCMC	1 cut(s)	395
BstUI	CGCG	2 cut(s)	62, 159
BstV1I	GCAGC	2 cut(s)	53, 117
Bsu15I	ATCGAT	1 cut(s)	35
BsuTUI	ATCGAT	1 cut(s)	35
BtsCI	GGATG	4 cut(s)	241, 286, 398, 436
CfoI	GCGC	2 cut(s)	22, 62
ClaI	ATCGAT	1 cut(s)	35
CseI	GACGC	2 cut(s)	51, 148
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	5 cut(s)	79, 152, 178, 264, 333
CviKI_1	RGCY	5 cut(s)	79, 152, 178, 264, 333
DdeI	CTNAG	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
EciI	GGCGGA	1 cut(s)	263
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco47III	AGCGCT	1 cut(s)	21
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	2 cut(s)	132, 359
EcoICRI	GAGCTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	1 cut(s)	196
FaiI	YATR	2 cut(s)	194, 242
FaqI	GGGAC	2 cut(s)	146, 347
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	42, 131, 246
FokI	GGATG	4 cut(s)	248, 293, 385, 423
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	3 cut(s)	42, 131, 246
FspBI	CTAG	2 cut(s)	17, 26
GlaI	GCGC	2 cut(s)	21, 61
GluI	GCNGC	3 cut(s)	42, 131, 246
HaeII	RGCGCY	1 cut(s)	23
HapII	CCGG	1 cut(s)	388
HgaI	GACGC	2 cut(s)	51, 148
HhaI	GCGC	2 cut(s)	22, 62
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	2 cut(s)	20, 60
HinP1I	GCGC	2 cut(s)	20, 60
HinfI	GANTC	2 cut(s)	168, 210
HpaII	CCGG	1 cut(s)	388
HphI	GGTGA	1 cut(s)	447
Hpy188I	TCNGA	1 cut(s)	207
Hpy188III	TCNNGA	1 cut(s)	278
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	3 cut(s)	356, 383, 405
HpyCH4V	TGCA	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	2 cut(s)	20, 60
LguI	GCTCTTC	1 cut(s)	168
LmnI	GCTCC	2 cut(s)	157, 201
Lsp1109I	GCAGC	2 cut(s)	53, 117
LweI	GCATC	1 cut(s)	271
MaeI	CTAG	2 cut(s)	17, 26
MboII	GAAGA	2 cut(s)	185, 208
MfeI	CAATTG	1 cut(s)	111
MhlI	GDGCHC	2 cut(s)	180, 395
MluCI	AATT	3 cut(s)	111, 319, 445
MluI	ACGCGT	1 cut(s)	157
MnlI	CCTC	5 cut(s)	47, 90, 209, 353, 375
MseI	TTAA	3 cut(s)	8, 74, 460
MspI	CCGG	1 cut(s)	388
MspR9I	CCNGG	2 cut(s)	327, 388
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	2 cut(s)	62, 159
NciI	CCSGG	1 cut(s)	388
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	392
NspI	RCATGY	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	168
PfeI	GAWTC	2 cut(s)	168, 210
PflMI	CCANNNNNTGG	1 cut(s)	113
PkrI	GCNGC	3 cut(s)	43, 132, 247
Psp124BI	GAGCTC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	8, 74, 460
SatI	GCNGC	3 cut(s)	42, 131, 246
ScrFI	CCNGG	2 cut(s)	327, 388
SduI	GDGCHC	2 cut(s)	180, 395
SetI	ASST	5 cut(s)	103, 154, 180, 234, 460
SfaNI	GCATC	1 cut(s)	271
SfuI	TTCGAA	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	3 cut(s)	111, 319, 445
SsiI	CCGC	2 cut(s)	245, 248
SspMI	CTAG	2 cut(s)	17, 26
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	325, 386
TaqI	TCGA	2 cut(s)	35, 171
TaqII	GACCGA	1 cut(s)	55
TasI	AATT	3 cut(s)	111, 319, 445
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	2 cut(s)	168, 210
Tru1I	TTAA	3 cut(s)	8, 74, 460
Tru9I	TTAA	3 cut(s)	8, 74, 460
TseI	GCWGC	2 cut(s)	41, 130
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	191
Van91I	CCANNNNNTGG	1 cut(s)	113
XceI	RCATGY	1 cut(s)	196
XspI	CTAG	2 cut(s)	17, 26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.